Cluster: Rep_597_CGC38
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_2011 | 2448611 | 2449360 | + | GT51 |
| pfam | Rep_597_c_0 | Rep_597_c_0_2012 | 2449515 | 2450072 | + | Hexapep |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_2013 | 2450325 | 2451134 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_597_c_0 | Rep_597_c_0_2014 | 2451359 | 2453644 | - | 9.B.14.3.1 |
Gene ID: Rep_597_c_0_2011
Type: CAZyme
Location: 2448611 - 2449360 (+)
Type: CAZyme
Location: 2448611 - 2449360 (+)
Gene ID: Rep_597_c_0_2012
Type: pfam
Location: 2449515 - 2450072 (+)
Type: pfam
Location: 2449515 - 2450072 (+)
Gene ID: Rep_597_c_0_2013
Type:
Location: 2450325 - 2451134 (-)
Type:
Location: 2450325 - 2451134 (-)
Gene ID: Rep_597_c_0_2014
Type: TC
Location: 2451359 - 2453644 (-)
Type: TC
Location: 2451359 - 2453644 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_2011 | vegan > omnivore | 1.29832 | 0.00863 |
| Rep_597_c_0_2011 | vegetarian > omnivore | 1.22925 | 0.00250 |
| Rep_597_c_0_2012 | vegan > omnivore | 1.05203 | 0.00863 |
| Rep_597_c_0_2012 | vegetarian > omnivore | 1.54655 | 0.00250 |
| Rep_597_c_0_2013 | vegan > omnivore | 1.18879 | 0.00863 |
| Rep_597_c_0_2013 | vegetarian > omnivore | 1.49879 | 0.00250 |