Cluster: Rep_597_CGC37
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_2000 | 2435484 | 2436659 | - | GT4 |
| pfam | Rep_597_c_0 | Rep_597_c_0_2001 | 2436656 | 2438179 | - | GH3 | GH3_M | GH3_C |
| TC | Rep_597_c_0 | Rep_597_c_0_2002 | 2438229 | 2439194 | - | 2.A.38.1.1 |
Gene ID: Rep_597_c_0_2000
Type: CAZyme
Location: 2435484 - 2436659 (-)
Type: CAZyme
Location: 2435484 - 2436659 (-)
Gene ID: Rep_597_c_0_2001
Type: pfam
Location: 2436656 - 2438179 (-)
Type: pfam
Location: 2436656 - 2438179 (-)
Gene ID: Rep_597_c_0_2002
Type: TC
Location: 2438229 - 2439194 (-)
Type: TC
Location: 2438229 - 2439194 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_2000 | vegetarian > omnivore | 1.01896 | 0.00250 |