Cluster: Rep_597_CGC32
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_1647 | 2011935 | 2015282 | - | 1.B.14.6.2 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1648 | 2015823 | 2016353 | - | PRC_RimM |
| pfam | Rep_597_c_0 | Rep_597_c_0_1649 | 2016368 | 2016928 | - | Ribosomal_S16 |
| TC | Rep_597_c_0 | Rep_597_c_0_1650 | 2017266 | 2018063 | + | 1.A.16.2.1 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1651 | 2018266 | 2019651 | - | GH23 |
Gene ID: Rep_597_c_0_1647
Type: TC
Location: 2011935 - 2015282 (-)
Type: TC
Location: 2011935 - 2015282 (-)
Gene ID: Rep_597_c_0_1648
Type: pfam
Location: 2015823 - 2016353 (-)
Type: pfam
Location: 2015823 - 2016353 (-)
Gene ID: Rep_597_c_0_1649
Type: pfam
Location: 2016368 - 2016928 (-)
Type: pfam
Location: 2016368 - 2016928 (-)
Gene ID: Rep_597_c_0_1650
Type: TC
Location: 2017266 - 2018063 (+)
Type: TC
Location: 2017266 - 2018063 (+)
Gene ID: Rep_597_c_0_1651
Type: CAZyme
Location: 2018266 - 2019651 (-)
Type: CAZyme
Location: 2018266 - 2019651 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1648 | vegetarian > omnivore | 1.30090 | 0.00250 |
| Rep_597_c_0_1649 | vegetarian > omnivore | 1.42123 | 0.00250 |
| Rep_597_c_0_1649 | vegetarian > vegan | 1.11296 | 0.01064 |
| Rep_597_c_0_1650 | vegan > omnivore | 1.02268 | 0.00863 |
| Rep_597_c_0_1651 | vegetarian > omnivore | 1.33349 | 0.00250 |