Cluster: Rep_597_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1557 | 1894466 | 1896364 | - | GH127 |
| peptidase | Rep_597_c_0 | Rep_597_c_0_1558 | 1896518 | 1897537 | - | S33.UPW |
| STP | Rep_597_c_0 | Rep_597_c_0_1559 | 1897547 | 1898833 | - | Aminotran_1_2 |
| TC | Rep_597_c_0 | Rep_597_c_0_1560 | 1899339 | 1900358 | - | 1.A.13.4.1 |
| TC | Rep_597_c_0 | Rep_597_c_0_1561 | 1900373 | 1901368 | - | 1.A.13.4.1 |
Gene ID: Rep_597_c_0_1557
Type: CAZyme
Location: 1894466 - 1896364 (-)
Type: CAZyme
Location: 1894466 - 1896364 (-)
Gene ID: Rep_597_c_0_1558
Type: peptidase
Location: 1896518 - 1897537 (-)
Type: peptidase
Location: 1896518 - 1897537 (-)
Gene ID: Rep_597_c_0_1559
Type: STP
Location: 1897547 - 1898833 (-)
Type: STP
Location: 1897547 - 1898833 (-)
Gene ID: Rep_597_c_0_1560
Type: TC
Location: 1899339 - 1900358 (-)
Type: TC
Location: 1899339 - 1900358 (-)
Gene ID: Rep_597_c_0_1561
Type: TC
Location: 1900373 - 1901368 (-)
Type: TC
Location: 1900373 - 1901368 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1557 | vegetarian > omnivore | 1.17808 | 0.00250 |
| Rep_597_c_0_1558 | vegetarian > omnivore | 1.07542 | 0.00250 |