Cluster: Rep_597_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_1385 | 1676360 | 1678609 | - | 1.B.14.10.1 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1386 | 1679043 | 1679714 | + | GH25 |
| TC | Rep_597_c_0 | Rep_597_c_0_1387 | 1679721 | 1681295 | + | 3.D.10.1.6 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1388 | 1681316 | 1682104 | + | ThuA |
| pfam | Rep_597_c_0 | Rep_597_c_0_1389 | 1682381 | 1683958 | + | GTP_EFTU | MMR_HSR1 | RF3_C | EF-G_D2 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1390 | 1684778 | 1687336 | + | GH28 |
Gene ID: Rep_597_c_0_1385
Type: TC
Location: 1676360 - 1678609 (-)
Type: TC
Location: 1676360 - 1678609 (-)
Gene ID: Rep_597_c_0_1386
Type: CAZyme
Location: 1679043 - 1679714 (+)
Type: CAZyme
Location: 1679043 - 1679714 (+)
Gene ID: Rep_597_c_0_1387
Type: TC
Location: 1679721 - 1681295 (+)
Type: TC
Location: 1679721 - 1681295 (+)
Gene ID: Rep_597_c_0_1388
Type: pfam
Location: 1681316 - 1682104 (+)
Type: pfam
Location: 1681316 - 1682104 (+)
Gene ID: Rep_597_c_0_1389
Type: pfam
Location: 1682381 - 1683958 (+)
Type: pfam
Location: 1682381 - 1683958 (+)
Gene ID: Rep_597_c_0_1390
Type: CAZyme
Location: 1684778 - 1687336 (+)
Type: CAZyme
Location: 1684778 - 1687336 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1386 | vegetarian > omnivore | 1.26140 | 0.00250 |
| Rep_597_c_0_1390 | vegetarian > omnivore | 1.26072 | 0.00250 |