Cluster: Rep_597_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1342 | 1612018 | 1613349 | + | GH109 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1343 | 1614343 | 1615047 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_597_c_0 | Rep_597_c_0_1344 | 1615123 | 1617186 | - | M03.UPA |
| TC | Rep_597_c_0 | Rep_597_c_0_1345 | 1617255 | 1620047 | - | 1.B.42.1.8 |
Gene ID: Rep_597_c_0_1342
Type: CAZyme
Location: 1612018 - 1613349 (+)
Type: CAZyme
Location: 1612018 - 1613349 (+)
Gene ID: Rep_597_c_0_1343
Type:
Location: 1614343 - 1615047 (-)
Type:
Location: 1614343 - 1615047 (-)
Gene ID: Rep_597_c_0_1344
Type: peptidase
Location: 1615123 - 1617186 (-)
Type: peptidase
Location: 1615123 - 1617186 (-)
Gene ID: Rep_597_c_0_1345
Type: TC
Location: 1617255 - 1620047 (-)
Type: TC
Location: 1617255 - 1620047 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1343 | vegetarian > omnivore | 1.11772 | 0.00250 |
| Rep_597_c_0_1345 | vegetarian > omnivore | 1.13244 | 0.00250 |