Cluster: Rep_597_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1217 | 1452739 | 1453983 | - | GH5_57 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1218 | 1454396 | 1455889 | + | PCMD | Calycin_like |
| TC | Rep_597_c_0 | Rep_597_c_0_1219 | 1456137 | 1457522 | - | 2.A.1.3.17 |
Gene ID: Rep_597_c_0_1217
Type: CAZyme
Location: 1452739 - 1453983 (-)
Type: CAZyme
Location: 1452739 - 1453983 (-)
Gene ID: Rep_597_c_0_1218
Type: pfam
Location: 1454396 - 1455889 (+)
Type: pfam
Location: 1454396 - 1455889 (+)
Gene ID: Rep_597_c_0_1219
Type: TC
Location: 1456137 - 1457522 (-)
Type: TC
Location: 1456137 - 1457522 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1219 | vegetarian > omnivore | 1.38534 | 0.00250 |