Cluster: Rep_597_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_1069 | 1272818 | 1273378 | + | 1.B.44.2.1 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1070 | 1273509 | 1273775 | + | Acetyltransf_1 | Acetyltransf_CG |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1071 | 1273790 | 1274749 | - | CE1 |
Gene ID: Rep_597_c_0_1069
Type: TC
Location: 1272818 - 1273378 (+)
Type: TC
Location: 1272818 - 1273378 (+)
Gene ID: Rep_597_c_0_1070
Type: pfam
Location: 1273509 - 1273775 (+)
Type: pfam
Location: 1273509 - 1273775 (+)
Gene ID: Rep_597_c_0_1071
Type: CAZyme
Location: 1273790 - 1274749 (-)
Type: CAZyme
Location: 1273790 - 1274749 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1070 | vegan > omnivore | 1.17290 | 0.00863 |