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Cluster: Rep_555_CGC92

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_555_c_60 Rep_555_c_60_7 4595 5881 + GH177
TC Rep_555_c_60 Rep_555_c_60_8 6078 8867 - 1.C.105.2.12
TF Rep_555_c_60 Rep_555_c_60_9 9200 9754 - GerE
STP Rep_555_c_60 Rep_555_c_60_10 9968 11044 + FecR
TC Rep_555_c_60 Rep_555_c_60_11 11128 14493 + 1.B.14.6.1
pfam Rep_555_c_60 Rep_555_c_60_12 14506 16194 + SusD_RagB | SusD-like_3
pfam Rep_555_c_60 Rep_555_c_60_13 16293 17702 + Arylsulfotrans | Arylsulfotran_2
CAZyme Rep_555_c_60 Rep_555_c_60_14 17720 19999 + GH163
CAZyme Rep_555_c_60 Rep_555_c_60_15 20026 21150 + GH18
CAZyme Rep_555_c_60 Rep_555_c_60_16 21308 22900 + GH20
Gene ID: Rep_555_c_60_7
Type: CAZyme
Location: 4595 - 5881 (+)
Gene ID: Rep_555_c_60_8
Type: TC
Location: 6078 - 8867 (-)
Gene ID: Rep_555_c_60_9
Type: TF
Location: 9200 - 9754 (-)
Gene ID: Rep_555_c_60_10
Type: STP
Location: 9968 - 11044 (+)
Gene ID: Rep_555_c_60_11
Type: TC
Location: 11128 - 14493 (+)
Gene ID: Rep_555_c_60_12
Type: pfam
Location: 14506 - 16194 (+)
Gene ID: Rep_555_c_60_13
Type: pfam
Location: 16293 - 17702 (+)
Gene ID: Rep_555_c_60_14
Type: CAZyme
Location: 17720 - 19999 (+)
Gene ID: Rep_555_c_60_15
Type: CAZyme
Location: 20026 - 21150 (+)
Gene ID: Rep_555_c_60_16
Type: CAZyme
Location: 21308 - 22900 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_555_c_60_7 vegetarian > omnivore 1.84664 0.01892
Rep_555_c_60_7 vegetarian > vegan 2.04205 0.01577

🧭 Explore Read Mapping of CGC

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