Cluster: Rep_555_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_555
- CGC Family ID: CGCFAM_01742
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_555_c_1 | Rep_555_c_1_136 | 186829 | 188175 | + | 1.A.26.1.2 |
| NULL(UNKNOWN) | Rep_555_c_1 | Rep_555_c_1_137 | 188234 | 188323 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_555_c_1 | Rep_555_c_1_138 | 188320 | 188790 | - | GH73 |
Gene ID: Rep_555_c_1_136
Type: TC
Location: 186829 - 188175 (+)
Type: TC
Location: 186829 - 188175 (+)
Gene ID: Rep_555_c_1_137
Type:
Location: 188234 - 188323 (-)
Type:
Location: 188234 - 188323 (-)
Gene ID: Rep_555_c_1_138
Type: CAZyme
Location: 188320 - 188790 (-)
Type: CAZyme
Location: 188320 - 188790 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp905196875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_555_c_1_137 | vegetarian > omnivore | 3.26002 | 0.00085 |
| Rep_555_c_1_137 | vegetarian > vegan | 4.92386 | 0.01577 |
| Rep_555_c_1_138 | vegetarian > omnivore | 2.96172 | 0.04149 |
| Rep_555_c_1_138 | vegetarian > vegan | 1.94044 | 0.01577 |