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Cluster: Rep_555_CGC88

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_48 Rep_555_c_48_11 16818 18389 + 2.A.21.3.2
CAZyme Rep_555_c_48 Rep_555_c_48_12 18410 21418 + GH2
pfam Rep_555_c_48 Rep_555_c_48_13 21458 22201 - DUF4469 | HU-DNA_bdg
CAZyme Rep_555_c_48 Rep_555_c_48_14 22507 23865 + GH78
NULL(UNKNOWN) Rep_555_c_48 Rep_555_c_48_15 23900 25648 + NULL(UNKNOWN)
[View Structural Homologs]
sulfatase Rep_555_c_48 Rep_555_c_48_16 25672 26760 + S1_7
CAZyme Rep_555_c_48 Rep_555_c_48_17 26775 29138 + GH92
TC Rep_555_c_48 Rep_555_c_48_18 29274 30419 + 2.A.1.7.16
CAZyme Rep_555_c_48 Rep_555_c_48_19 30428 33322 + GH38
Gene ID: Rep_555_c_48_11
Type: TC
Location: 16818 - 18389 (+)
Gene ID: Rep_555_c_48_12
Type: CAZyme
Location: 18410 - 21418 (+)
Gene ID: Rep_555_c_48_13
Type: pfam
Location: 21458 - 22201 (-)
Gene ID: Rep_555_c_48_14
Type: CAZyme
Location: 22507 - 23865 (+)
Gene ID: Rep_555_c_48_15
Type:
Location: 23900 - 25648 (+)
Gene ID: Rep_555_c_48_16
Type: sulfatase
Location: 25672 - 26760 (+)
Gene ID: Rep_555_c_48_17
Type: CAZyme
Location: 26775 - 29138 (+)
Gene ID: Rep_555_c_48_18
Type: TC
Location: 29274 - 30419 (+)
Gene ID: Rep_555_c_48_19
Type: CAZyme
Location: 30428 - 33322 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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