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Cluster: Rep_555_CGC87

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_46 Rep_555_c_46_13 17248 20517 - 1.B.14.6.1
pfam Rep_555_c_46 Rep_555_c_46_14 20733 21491 - DUF4469 | HU-DNA_bdg
CAZyme Rep_555_c_46 Rep_555_c_46_15 21626 24022 - GH95
NULL(UNKNOWN) Rep_555_c_46 Rep_555_c_46_16 24054 24254 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_555_c_46 Rep_555_c_46_17 24310 26934 - GH141
TC Rep_555_c_46 Rep_555_c_46_18 26934 28478 - 8.A.46.1.3
TC Rep_555_c_46 Rep_555_c_46_19 28491 31631 - 1.B.14.6.1
TC Rep_555_c_46 Rep_555_c_46_20 32004 33191 + 3.A.1.7.5
TC Rep_555_c_46 Rep_555_c_46_21 33199 34086 + 3.A.1.7.2
TC Rep_555_c_46 Rep_555_c_46_22 34187 34939 + 3.A.1.7.1
Gene ID: Rep_555_c_46_13
Type: TC
Location: 17248 - 20517 (-)
Gene ID: Rep_555_c_46_14
Type: pfam
Location: 20733 - 21491 (-)
Gene ID: Rep_555_c_46_15
Type: CAZyme
Location: 21626 - 24022 (-)
Gene ID: Rep_555_c_46_16
Type:
Location: 24054 - 24254 (+)
Gene ID: Rep_555_c_46_17
Type: CAZyme
Location: 24310 - 26934 (-)
Gene ID: Rep_555_c_46_18
Type: TC
Location: 26934 - 28478 (-)
Gene ID: Rep_555_c_46_19
Type: TC
Location: 28491 - 31631 (-)
Gene ID: Rep_555_c_46_20
Type: TC
Location: 32004 - 33191 (+)
Gene ID: Rep_555_c_46_21
Type: TC
Location: 33199 - 34086 (+)
Gene ID: Rep_555_c_46_22
Type: TC
Location: 34187 - 34939 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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