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Cluster: Rep_555_CGC77

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_555_c_33 Rep_555_c_33_27 31933 33963 + GH182
pfam Rep_555_c_33 Rep_555_c_33_28 34061 34729 - CAT
NULL(UNKNOWN) Rep_555_c_33 Rep_555_c_33_29 35078 35179 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_555_c_33 Rep_555_c_33_30 35297 37006 + 3.A.3.7.2
TC Rep_555_c_33 Rep_555_c_33_31 37034 39076 + 3.A.3.7.2
TC Rep_555_c_33 Rep_555_c_33_32 39098 39676 + 3.A.3.7.2
NULL(UNKNOWN) Rep_555_c_33 Rep_555_c_33_33 39725 40480 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_555_c_33 Rep_555_c_33_34 40494 41615 + KdpD
TC Rep_555_c_33 Rep_555_c_33_35 41617 43347 + 2.A.21.9.1
TC Rep_555_c_33 Rep_555_c_33_36 43456 43881 - 1.A.22.1.1
Gene ID: Rep_555_c_33_27
Type: CAZyme
Location: 31933 - 33963 (+)
Gene ID: Rep_555_c_33_28
Type: pfam
Location: 34061 - 34729 (-)
Gene ID: Rep_555_c_33_29
Type:
Location: 35078 - 35179 (+)
Gene ID: Rep_555_c_33_30
Type: TC
Location: 35297 - 37006 (+)
Gene ID: Rep_555_c_33_31
Type: TC
Location: 37034 - 39076 (+)
Gene ID: Rep_555_c_33_32
Type: TC
Location: 39098 - 39676 (+)
Gene ID: Rep_555_c_33_33
Type:
Location: 39725 - 40480 (+)
Gene ID: Rep_555_c_33_34
Type: pfam
Location: 40494 - 41615 (+)
Gene ID: Rep_555_c_33_35
Type: TC
Location: 41617 - 43347 (+)
Gene ID: Rep_555_c_33_36
Type: TC
Location: 43456 - 43881 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_555_c_33_29 vegetarian > omnivore 2.83065 0.00085
Rep_555_c_33_29 vegetarian > vegan 2.70185 0.01577

🧭 Explore Read Mapping of CGC

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