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Cluster: Rep_555_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_19 Rep_555_c_19_20 21763 23730 - 2.A.21.9.2
pfam Rep_555_c_19 Rep_555_c_19_21 23963 26578 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2
CAZyme Rep_555_c_19 Rep_555_c_19_22 26698 29355 - GH2
CAZyme Rep_555_c_19 Rep_555_c_19_23 29390 31807 - GH95
CAZyme Rep_555_c_19 Rep_555_c_19_24 31858 34221 - GH95
sulfatase Rep_555_c_19 Rep_555_c_19_25 34363 35973 - S1_27
TC Rep_555_c_19 Rep_555_c_19_26 35987 39313 - 1.B.14.6.1
CAZyme Rep_555_c_19 Rep_555_c_19_27 39548 40777 - GH154
CAZyme Rep_555_c_19 Rep_555_c_19_28 40785 41996 - GH88
Gene ID: Rep_555_c_19_20
Type: TC
Location: 21763 - 23730 (-)
Gene ID: Rep_555_c_19_21
Type: pfam
Location: 23963 - 26578 (-)
Gene ID: Rep_555_c_19_22
Type: CAZyme
Location: 26698 - 29355 (-)
Gene ID: Rep_555_c_19_23
Type: CAZyme
Location: 29390 - 31807 (-)
Gene ID: Rep_555_c_19_24
Type: CAZyme
Location: 31858 - 34221 (-)
Gene ID: Rep_555_c_19_25
Type: sulfatase
Location: 34363 - 35973 (-)
Gene ID: Rep_555_c_19_26
Type: TC
Location: 35987 - 39313 (-)
Gene ID: Rep_555_c_19_27
Type: CAZyme
Location: 39548 - 40777 (-)
Gene ID: Rep_555_c_19_28
Type: CAZyme
Location: 40785 - 41996 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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