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Cluster: Rep_555_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_555_c_18 Rep_555_c_18_49 61677 63839 - GH2
pfam Rep_555_c_18 Rep_555_c_18_50 64236 64832 + Bac_DNA_binding | HU-HIG
TF Rep_555_c_18 Rep_555_c_18_51 64829 68911 + HTH_AraC
CAZyme Rep_555_c_18 Rep_555_c_18_52 69012 70136 + GH105
TC Rep_555_c_18 Rep_555_c_18_53 70305 73340 + 1.B.14.6.1
TC Rep_555_c_18 Rep_555_c_18_54 73362 74972 + 8.A.46.1.6
NULL(UNKNOWN) Rep_555_c_18 Rep_555_c_18_55 75064 75450 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_555_c_18 Rep_555_c_18_56 75531 77804 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_555_c_18 Rep_555_c_18_57 77834 80251 + GH3
Gene ID: Rep_555_c_18_49
Type: CAZyme
Location: 61677 - 63839 (-)
Gene ID: Rep_555_c_18_50
Type: pfam
Location: 64236 - 64832 (+)
Gene ID: Rep_555_c_18_51
Type: TF
Location: 64829 - 68911 (+)
Gene ID: Rep_555_c_18_52
Type: CAZyme
Location: 69012 - 70136 (+)
Gene ID: Rep_555_c_18_53
Type: TC
Location: 70305 - 73340 (+)
Gene ID: Rep_555_c_18_54
Type: TC
Location: 73362 - 74972 (+)
Gene ID: Rep_555_c_18_55
Type:
Location: 75064 - 75450 (+)
Gene ID: Rep_555_c_18_56
Type:
Location: 75531 - 77804 (+)
Gene ID: Rep_555_c_18_57
Type: CAZyme
Location: 77834 - 80251 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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