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Cluster: Rep_555_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_555_c_18 Rep_555_c_18_25 24979 26502 - PL29
TC Rep_555_c_18 Rep_555_c_18_26 26543 30532 - 9.A.25.1.1
TC Rep_555_c_18 Rep_555_c_18_27 30753 32228 - 8.A.46.1.3
TC Rep_555_c_18 Rep_555_c_18_28 32249 35386 - 1.B.14.6.1
TF Rep_555_c_18 Rep_555_c_18_29 35546 39664 - HTH_AraC
CAZyme Rep_555_c_18 Rep_555_c_18_30 39863 42331 - GH2
CAZyme Rep_555_c_18 Rep_555_c_18_31 42361 43605 - GH88
CAZyme Rep_555_c_18 Rep_555_c_18_32 43656 44822 - PL38
Gene ID: Rep_555_c_18_25
Type: CAZyme
Location: 24979 - 26502 (-)
Gene ID: Rep_555_c_18_26
Type: TC
Location: 26543 - 30532 (-)
Gene ID: Rep_555_c_18_27
Type: TC
Location: 30753 - 32228 (-)
Gene ID: Rep_555_c_18_28
Type: TC
Location: 32249 - 35386 (-)
Gene ID: Rep_555_c_18_29
Type: TF
Location: 35546 - 39664 (-)
Gene ID: Rep_555_c_18_30
Type: CAZyme
Location: 39863 - 42331 (-)
Gene ID: Rep_555_c_18_31
Type: CAZyme
Location: 42361 - 43605 (-)
Gene ID: Rep_555_c_18_32
Type: CAZyme
Location: 43656 - 44822 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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