Cluster: Rep_555_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_555
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_555_c_0 | Rep_555_c_0_103 | 148051 | 151386 | + | 1.B.14.6.1 |
| pfam | Rep_555_c_0 | Rep_555_c_0_104 | 151397 | 152878 | + | SusD_RagB | SusD-like_3 |
| sulfatase | Rep_555_c_0 | Rep_555_c_0_105 | 152995 | 155109 | + | S1_17 |
| CAZyme | Rep_555_c_0 | Rep_555_c_0_106 | 155122 | 156531 | + | CE20 |
| pfam | Rep_555_c_0 | Rep_555_c_0_107 | 156572 | 157243 | + | DUF2461 |
| CAZyme | Rep_555_c_0 | Rep_555_c_0_108 | 157373 | 158551 | - | GH130_1 |
Gene ID: Rep_555_c_0_103
Type: TC
Location: 148051 - 151386 (+)
Type: TC
Location: 148051 - 151386 (+)
Gene ID: Rep_555_c_0_104
Type: pfam
Location: 151397 - 152878 (+)
Type: pfam
Location: 151397 - 152878 (+)
Gene ID: Rep_555_c_0_105
Type: sulfatase
Location: 152995 - 155109 (+)
Type: sulfatase
Location: 152995 - 155109 (+)
Gene ID: Rep_555_c_0_106
Type: CAZyme
Location: 155122 - 156531 (+)
Type: CAZyme
Location: 155122 - 156531 (+)
Gene ID: Rep_555_c_0_107
Type: pfam
Location: 156572 - 157243 (+)
Type: pfam
Location: 156572 - 157243 (+)
Gene ID: Rep_555_c_0_108
Type: CAZyme
Location: 157373 - 158551 (-)
Type: CAZyme
Location: 157373 - 158551 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp905196875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.