Cluster: Rep_555_CGC42
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_555
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_555_c_12 | Rep_555_c_12_96 | 90007 | 91230 | - | GH154 |
| CAZyme | Rep_555_c_12 | Rep_555_c_12_97 | 91237 | 92439 | - | GH88 |
| CAZyme | Rep_555_c_12 | Rep_555_c_12_98 | 92701 | 94935 | - | GH95 |
| sulfatase | Rep_555_c_12 | Rep_555_c_12_99 | 95060 | 96418 | - | S1_14 |
| CAZyme | Rep_555_c_12 | Rep_555_c_12_100 | 96425 | 97657 | - | GH117 |
| CAZyme | Rep_555_c_12 | Rep_555_c_12_101 | 97663 | 99075 | - | GH29 |
| TC | Rep_555_c_12 | Rep_555_c_12_102 | 99091 | 100338 | - | 2.A.1.7.1 |
Gene ID: Rep_555_c_12_96
Type: CAZyme
Location: 90007 - 91230 (-)
Type: CAZyme
Location: 90007 - 91230 (-)
Gene ID: Rep_555_c_12_97
Type: CAZyme
Location: 91237 - 92439 (-)
Type: CAZyme
Location: 91237 - 92439 (-)
Gene ID: Rep_555_c_12_98
Type: CAZyme
Location: 92701 - 94935 (-)
Type: CAZyme
Location: 92701 - 94935 (-)
Gene ID: Rep_555_c_12_99
Type: sulfatase
Location: 95060 - 96418 (-)
Type: sulfatase
Location: 95060 - 96418 (-)
Gene ID: Rep_555_c_12_100
Type: CAZyme
Location: 96425 - 97657 (-)
Type: CAZyme
Location: 96425 - 97657 (-)
Gene ID: Rep_555_c_12_101
Type: CAZyme
Location: 97663 - 99075 (-)
Type: CAZyme
Location: 97663 - 99075 (-)
Gene ID: Rep_555_c_12_102
Type: TC
Location: 99091 - 100338 (-)
Type: TC
Location: 99091 - 100338 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp905196875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_555_c_12_96 | vegetarian > omnivore | 1.33891 | 0.00085 |