Cluster: Rep_555_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_555
- CGC Family ID: CGCFAM_11010
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_555_c_0 | Rep_555_c_0_77 | 115193 | 116221 | + | 2.A.7.6.1 |
| pfam | Rep_555_c_0 | Rep_555_c_0_78 | 116256 | 117500 | + | URO-D |
| CAZyme | Rep_555_c_0 | Rep_555_c_0_79 | 117497 | 118948 | + | GH29 |
| STP | Rep_555_c_0 | Rep_555_c_0_80 | 119014 | 120276 | + | EPSP_synthase |
| NULL(UNKNOWN) | Rep_555_c_0 | Rep_555_c_0_81 | 120278 | 120697 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_555_c_0 | Rep_555_c_0_82 | 120816 | 121622 | + | 3.A.1.15.7 |
Gene ID: Rep_555_c_0_77
Type: TC
Location: 115193 - 116221 (+)
Type: TC
Location: 115193 - 116221 (+)
Gene ID: Rep_555_c_0_78
Type: pfam
Location: 116256 - 117500 (+)
Type: pfam
Location: 116256 - 117500 (+)
Gene ID: Rep_555_c_0_79
Type: CAZyme
Location: 117497 - 118948 (+)
Type: CAZyme
Location: 117497 - 118948 (+)
Gene ID: Rep_555_c_0_80
Type: STP
Location: 119014 - 120276 (+)
Type: STP
Location: 119014 - 120276 (+)
Gene ID: Rep_555_c_0_81
Type:
Location: 120278 - 120697 (+)
Type:
Location: 120278 - 120697 (+)
Gene ID: Rep_555_c_0_82
Type: TC
Location: 120816 - 121622 (+)
Type: TC
Location: 120816 - 121622 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp905196875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_555_c_0_81 | vegetarian > omnivore | 2.60408 | 0.00085 |
| Rep_555_c_0_81 | vegetarian > vegan | 1.66866 | 0.01465 |