Cluster: Rep_555_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_555
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_555_c_10 | Rep_555_c_10_25 | 33911 | 34630 | - | 3.A.1.132.11 |
| pfam | Rep_555_c_10 | Rep_555_c_10_26 | 34661 | 36088 | - | NPCBM_assoc |
| pfam | Rep_555_c_10 | Rep_555_c_10_27 | 36323 | 37855 | - | OEP | OEP |
| CAZyme | Rep_555_c_10 | Rep_555_c_10_28 | 38154 | 40448 | + | GH92 |
| TC | Rep_555_c_10 | Rep_555_c_10_29 | 40545 | 41789 | + | 2.A.21.9.1 |
Gene ID: Rep_555_c_10_25
Type: TC
Location: 33911 - 34630 (-)
Type: TC
Location: 33911 - 34630 (-)
Gene ID: Rep_555_c_10_26
Type: pfam
Location: 34661 - 36088 (-)
Type: pfam
Location: 34661 - 36088 (-)
Gene ID: Rep_555_c_10_27
Type: pfam
Location: 36323 - 37855 (-)
Type: pfam
Location: 36323 - 37855 (-)
Gene ID: Rep_555_c_10_28
Type: CAZyme
Location: 38154 - 40448 (+)
Type: CAZyme
Location: 38154 - 40448 (+)
Gene ID: Rep_555_c_10_29
Type: TC
Location: 40545 - 41789 (+)
Type: TC
Location: 40545 - 41789 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp905196875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_555_c_10_25 | vegetarian > omnivore | 1.80690 | 0.04149 |
| Rep_555_c_10_25 | vegetarian > vegan | 1.72459 | 0.01577 |