Cluster: Rep_555_CGC33
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_555
- CGC Family ID: CGCFAM_00158
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_555_c_9 | Rep_555_c_9_21 | 22883 | 26185 | - | 1.B.14.6.1 |
| STP | Rep_555_c_9 | Rep_555_c_9_22 | 26295 | 27560 | - | FecR |
| STP | Rep_555_c_9 | Rep_555_c_9_23 | 27588 | 28172 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_555_c_9 | Rep_555_c_9_24 | 28317 | 29681 | - | GH29 |
| pfam | Rep_555_c_9 | Rep_555_c_9_25 | 29760 | 31382 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_555_c_9 | Rep_555_c_9_26 | 31420 | 34803 | - | 1.B.14.6.1 |
| STP | Rep_555_c_9 | Rep_555_c_9_27 | 35022 | 35702 | - | FecR |
| STP | Rep_555_c_9 | Rep_555_c_9_28 | 36094 | 37038 | + | FecR |
| TC | Rep_555_c_9 | Rep_555_c_9_29 | 37278 | 40562 | + | 1.B.14.6.1 |
| pfam | Rep_555_c_9 | Rep_555_c_9_30 | 40578 | 42122 | + | SusD_RagB | SusD-like_3 |
| sulfatase | Rep_555_c_9 | Rep_555_c_9_31 | 42235 | 43752 | + | S1_20 |
| CAZyme | Rep_555_c_9 | Rep_555_c_9_32 | 43764 | 46223 | + | GH2 |
| sulfatase | Rep_555_c_9 | Rep_555_c_9_33 | 46232 | 47632 | + | S1_20 |
| CAZyme | Rep_555_c_9 | Rep_555_c_9_34 | 47629 | 49680 | + | GH20 |
| CAZyme | Rep_555_c_9 | Rep_555_c_9_35 | 49947 | 52613 | + | GH2 |
| CAZyme | Rep_555_c_9 | Rep_555_c_9_36 | 52672 | 53457 | + | GH16_3 |
Gene ID: Rep_555_c_9_21
Type: TC
Location: 22883 - 26185 (-)
Type: TC
Location: 22883 - 26185 (-)
Gene ID: Rep_555_c_9_22
Type: STP
Location: 26295 - 27560 (-)
Type: STP
Location: 26295 - 27560 (-)
Gene ID: Rep_555_c_9_23
Type: STP
Location: 27588 - 28172 (-)
Type: STP
Location: 27588 - 28172 (-)
Gene ID: Rep_555_c_9_24
Type: CAZyme
Location: 28317 - 29681 (-)
Type: CAZyme
Location: 28317 - 29681 (-)
Gene ID: Rep_555_c_9_25
Type: pfam
Location: 29760 - 31382 (-)
Type: pfam
Location: 29760 - 31382 (-)
Gene ID: Rep_555_c_9_26
Type: TC
Location: 31420 - 34803 (-)
Type: TC
Location: 31420 - 34803 (-)
Gene ID: Rep_555_c_9_27
Type: STP
Location: 35022 - 35702 (-)
Type: STP
Location: 35022 - 35702 (-)
Gene ID: Rep_555_c_9_28
Type: STP
Location: 36094 - 37038 (+)
Type: STP
Location: 36094 - 37038 (+)
Gene ID: Rep_555_c_9_29
Type: TC
Location: 37278 - 40562 (+)
Type: TC
Location: 37278 - 40562 (+)
Gene ID: Rep_555_c_9_30
Type: pfam
Location: 40578 - 42122 (+)
Type: pfam
Location: 40578 - 42122 (+)
Gene ID: Rep_555_c_9_31
Type: sulfatase
Location: 42235 - 43752 (+)
Type: sulfatase
Location: 42235 - 43752 (+)
Gene ID: Rep_555_c_9_32
Type: CAZyme
Location: 43764 - 46223 (+)
Type: CAZyme
Location: 43764 - 46223 (+)
Gene ID: Rep_555_c_9_33
Type: sulfatase
Location: 46232 - 47632 (+)
Type: sulfatase
Location: 46232 - 47632 (+)
Gene ID: Rep_555_c_9_34
Type: CAZyme
Location: 47629 - 49680 (+)
Type: CAZyme
Location: 47629 - 49680 (+)
Gene ID: Rep_555_c_9_35
Type: CAZyme
Location: 49947 - 52613 (+)
Type: CAZyme
Location: 49947 - 52613 (+)
Gene ID: Rep_555_c_9_36
Type: CAZyme
Location: 52672 - 53457 (+)
Type: CAZyme
Location: 52672 - 53457 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp905196875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.