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Cluster: Rep_555_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_5 Rep_555_c_5_57 58763 60088 - 3.A.5.1.1
TC Rep_555_c_5 Rep_555_c_5_58 60168 61490 - 2.A.66.1.45
pfam Rep_555_c_5 Rep_555_c_5_59 61602 61952 - Asp_decarbox
pfam Rep_555_c_5 Rep_555_c_5_60 61979 62821 - Pantoate_ligase
CAZyme Rep_555_c_5 Rep_555_c_5_61 62870 63739 + GT5
pfam Rep_555_c_5 Rep_555_c_5_62 63751 65112 + DUF4270
CAZyme Rep_555_c_5 Rep_555_c_5_63 65191 66492 - GH57
CAZyme Rep_555_c_5 Rep_555_c_5_64 66523 67785 - GT4
CAZyme Rep_555_c_5 Rep_555_c_5_65 67798 69732 - GH133
Gene ID: Rep_555_c_5_57
Type: TC
Location: 58763 - 60088 (-)
Gene ID: Rep_555_c_5_58
Type: TC
Location: 60168 - 61490 (-)
Gene ID: Rep_555_c_5_59
Type: pfam
Location: 61602 - 61952 (-)
Gene ID: Rep_555_c_5_60
Type: pfam
Location: 61979 - 62821 (-)
Gene ID: Rep_555_c_5_61
Type: CAZyme
Location: 62870 - 63739 (+)
Gene ID: Rep_555_c_5_62
Type: pfam
Location: 63751 - 65112 (+)
Gene ID: Rep_555_c_5_63
Type: CAZyme
Location: 65191 - 66492 (-)
Gene ID: Rep_555_c_5_64
Type: CAZyme
Location: 66523 - 67785 (-)
Gene ID: Rep_555_c_5_65
Type: CAZyme
Location: 67798 - 69732 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_555_c_5_58 vegetarian > omnivore 1.67365 0.00085

🧭 Explore Read Mapping of CGC

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