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Cluster: Rep_555_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_4 Rep_555_c_4_89 123325 124536 - 3.D.2.4.1
STP Rep_555_c_4 Rep_555_c_4_90 124585 125106 - SKI
pfam Rep_555_c_4 Rep_555_c_4_91 125241 125876 + RNase_H | Cauli_VI
CAZyme Rep_555_c_4 Rep_555_c_4_92 125888 126907 + GT90
NULL(UNKNOWN) Rep_555_c_4 Rep_555_c_4_93 126904 127761 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_555_c_4 Rep_555_c_4_94 127787 129070 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_555_c_4 Rep_555_c_4_95 129288 129998 + GT2
CAZyme Rep_555_c_4 Rep_555_c_4_96 129995 130795 + CE4
pfam Rep_555_c_4 Rep_555_c_4_97 130792 131970 + GT87
pfam Rep_555_c_4 Rep_555_c_4_98 131967 132860 + Glyco_tranf_2_5
CAZyme Rep_555_c_4 Rep_555_c_4_99 132779 133756 - GT2
CAZyme Rep_555_c_4 Rep_555_c_4_100 133759 134547 - GT2
CAZyme Rep_555_c_4 Rep_555_c_4_101 134677 135807 + GT4
pfam Rep_555_c_4 Rep_555_c_4_102 135877 136701 + Methyltransf_21
pfam Rep_555_c_4 Rep_555_c_4_103 136698 137645 - Kdo
CAZyme Rep_555_c_4 Rep_555_c_4_104 137655 138683 - GT9
pfam Rep_555_c_4 Rep_555_c_4_105 138683 139288 - DUF4254
CAZyme Rep_555_c_4 Rep_555_c_4_106 139365 140462 - GH43_33
TC Rep_555_c_4 Rep_555_c_4_107 140603 142102 - 8.A.46.3.3
TC Rep_555_c_4 Rep_555_c_4_108 142133 145231 - 1.B.14.6.1
pfam Rep_555_c_4 Rep_555_c_4_109 145763 146866 + 2-Hacid_dh | 2-Hacid_dh_C
TC Rep_555_c_4 Rep_555_c_4_110 146906 148105 + 2.A.1.46.5
CAZyme Rep_555_c_4 Rep_555_c_4_111 148119 149357 - GT1
pfam Rep_555_c_4 Rep_555_c_4_112 149771 150949 + DUF4925
TC Rep_555_c_4 Rep_555_c_4_113 150968 153784 + 1.B.14.10.1
pfam Rep_555_c_4 Rep_555_c_4_114 153859 154422 - Formyl_trans_N
TC Rep_555_c_4 Rep_555_c_4_115 154577 154813 + 3.D.1.6.3
pfam Rep_555_c_4 Rep_555_c_4_116 154835 156100 + ketoacyl-synt | Ketoacyl-synt_C
pfam Rep_555_c_4 Rep_555_c_4_117 156102 157013 + dsrm | Ribonuclease_3 | Ribonucleas_3_3 | RM44_endonuclase
TC Rep_555_c_4 Rep_555_c_4_118 157136 158698 + 2.A.21.9.2
Gene ID: Rep_555_c_4_89
Type: TC
Location: 123325 - 124536 (-)
Gene ID: Rep_555_c_4_90
Type: STP
Location: 124585 - 125106 (-)
Gene ID: Rep_555_c_4_91
Type: pfam
Location: 125241 - 125876 (+)
Gene ID: Rep_555_c_4_92
Type: CAZyme
Location: 125888 - 126907 (+)
Gene ID: Rep_555_c_4_93
Type:
Location: 126904 - 127761 (-)
Gene ID: Rep_555_c_4_94
Type: pfam
Location: 127787 - 129070 (-)
Gene ID: Rep_555_c_4_95
Type: CAZyme
Location: 129288 - 129998 (+)
Gene ID: Rep_555_c_4_96
Type: CAZyme
Location: 129995 - 130795 (+)
Gene ID: Rep_555_c_4_97
Type: pfam
Location: 130792 - 131970 (+)
Gene ID: Rep_555_c_4_98
Type: pfam
Location: 131967 - 132860 (+)
Gene ID: Rep_555_c_4_99
Type: CAZyme
Location: 132779 - 133756 (-)
Gene ID: Rep_555_c_4_100
Type: CAZyme
Location: 133759 - 134547 (-)
Gene ID: Rep_555_c_4_101
Type: CAZyme
Location: 134677 - 135807 (+)
Gene ID: Rep_555_c_4_102
Type: pfam
Location: 135877 - 136701 (+)
Gene ID: Rep_555_c_4_103
Type: pfam
Location: 136698 - 137645 (-)
Gene ID: Rep_555_c_4_104
Type: CAZyme
Location: 137655 - 138683 (-)
Gene ID: Rep_555_c_4_105
Type: pfam
Location: 138683 - 139288 (-)
Gene ID: Rep_555_c_4_106
Type: CAZyme
Location: 139365 - 140462 (-)
Gene ID: Rep_555_c_4_107
Type: TC
Location: 140603 - 142102 (-)
Gene ID: Rep_555_c_4_108
Type: TC
Location: 142133 - 145231 (-)
Gene ID: Rep_555_c_4_109
Type: pfam
Location: 145763 - 146866 (+)
Gene ID: Rep_555_c_4_110
Type: TC
Location: 146906 - 148105 (+)
Gene ID: Rep_555_c_4_111
Type: CAZyme
Location: 148119 - 149357 (-)
Gene ID: Rep_555_c_4_112
Type: pfam
Location: 149771 - 150949 (+)
Gene ID: Rep_555_c_4_113
Type: TC
Location: 150968 - 153784 (+)
Gene ID: Rep_555_c_4_114
Type: pfam
Location: 153859 - 154422 (-)
Gene ID: Rep_555_c_4_115
Type: TC
Location: 154577 - 154813 (+)
Gene ID: Rep_555_c_4_116
Type: pfam
Location: 154835 - 156100 (+)
Gene ID: Rep_555_c_4_117
Type: pfam
Location: 156102 - 157013 (+)
Gene ID: Rep_555_c_4_118
Type: TC
Location: 157136 - 158698 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_555_c_4_90 vegetarian > omnivore 1.27754 0.04149
Rep_555_c_4_91 vegetarian > omnivore 2.84826 0.00085

🧭 Explore Read Mapping of CGC

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