dbCAN Logo

Cluster: Rep_555_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_0 Rep_555_c_0_52 72667 76008 + 1.B.14.6.1
TC Rep_555_c_0 Rep_555_c_0_53 76023 77561 + 8.A.46.1.5
CAZyme Rep_555_c_0 Rep_555_c_0_54 77595 79304 + GH136
CAZyme Rep_555_c_0 Rep_555_c_0_55 79308 81455 + GH50
pfam Rep_555_c_0 Rep_555_c_0_56 81475 84810 + TPR_6 | TPR_8 | TPR_16 | DUF5107
CAZyme Rep_555_c_0 Rep_555_c_0_57 84935 86539 + GH31_19
CAZyme Rep_555_c_0 Rep_555_c_0_58 86582 88732 - GH89
NULL(UNKNOWN) Rep_555_c_0 Rep_555_c_0_59 88799 88918 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_555_c_0 Rep_555_c_0_60 88932 90110 - GH16_24
pfam Rep_555_c_0 Rep_555_c_0_61 90203 91675 - SusD_RagB | SusD-like_3
TC Rep_555_c_0 Rep_555_c_0_62 91707 95183 - 1.B.14.6.1
Gene ID: Rep_555_c_0_52
Type: TC
Location: 72667 - 76008 (+)
Gene ID: Rep_555_c_0_53
Type: TC
Location: 76023 - 77561 (+)
Gene ID: Rep_555_c_0_54
Type: CAZyme
Location: 77595 - 79304 (+)
Gene ID: Rep_555_c_0_55
Type: CAZyme
Location: 79308 - 81455 (+)
Gene ID: Rep_555_c_0_56
Type: pfam
Location: 81475 - 84810 (+)
Gene ID: Rep_555_c_0_57
Type: CAZyme
Location: 84935 - 86539 (+)
Gene ID: Rep_555_c_0_58
Type: CAZyme
Location: 86582 - 88732 (-)
Gene ID: Rep_555_c_0_59
Type:
Location: 88799 - 88918 (-)
Gene ID: Rep_555_c_0_60
Type: CAZyme
Location: 88932 - 90110 (-)
Gene ID: Rep_555_c_0_61
Type: pfam
Location: 90203 - 91675 (-)
Gene ID: Rep_555_c_0_62
Type: TC
Location: 91707 - 95183 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List