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Cluster: Rep_555_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_2 Rep_555_c_2_37 58761 62390 + 1.B.14.6.1
TC Rep_555_c_2 Rep_555_c_2_38 62429 63967 + 8.A.46.1.4
CAZyme Rep_555_c_2 Rep_555_c_2_39 64058 65557 + GH29
TC Rep_555_c_2 Rep_555_c_2_40 65631 67199 - 3.D.10.1.4
pfam Rep_555_c_2 Rep_555_c_2_41 67401 68096 + DUF3108_like
TF Rep_555_c_2 Rep_555_c_2_42 68185 72126 - HTH_AraC
TC Rep_555_c_2 Rep_555_c_2_43 72449 75658 + 1.B.14.6.1
pfam Rep_555_c_2 Rep_555_c_2_44 75672 77432 + SusD_RagB | SusD-like_3
TC Rep_555_c_2 Rep_555_c_2_45 77461 80223 + 1.B.14.6.2
pfam Rep_555_c_2 Rep_555_c_2_46 80235 81875 + SusD_RagB | SusD-like_3
CAZyme Rep_555_c_2 Rep_555_c_2_47 81965 83422 + GH136
Gene ID: Rep_555_c_2_37
Type: TC
Location: 58761 - 62390 (+)
Gene ID: Rep_555_c_2_38
Type: TC
Location: 62429 - 63967 (+)
Gene ID: Rep_555_c_2_39
Type: CAZyme
Location: 64058 - 65557 (+)
Gene ID: Rep_555_c_2_40
Type: TC
Location: 65631 - 67199 (-)
Gene ID: Rep_555_c_2_41
Type: pfam
Location: 67401 - 68096 (+)
Gene ID: Rep_555_c_2_42
Type: TF
Location: 68185 - 72126 (-)
Gene ID: Rep_555_c_2_43
Type: TC
Location: 72449 - 75658 (+)
Gene ID: Rep_555_c_2_44
Type: pfam
Location: 75672 - 77432 (+)
Gene ID: Rep_555_c_2_45
Type: TC
Location: 77461 - 80223 (+)
Gene ID: Rep_555_c_2_46
Type: pfam
Location: 80235 - 81875 (+)
Gene ID: Rep_555_c_2_47
Type: CAZyme
Location: 81965 - 83422 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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