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Cluster: Rep_555_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_555_c_0 Rep_555_c_0_10 11461 14748 + 1.B.14.6.3
CAZyme Rep_555_c_0 Rep_555_c_0_11 14910 16277 - GH177
CAZyme Rep_555_c_0 Rep_555_c_0_12 16290 17870 - GH20
pfam Rep_555_c_0 Rep_555_c_0_13 17897 19747 - SusD_RagB | SusD-like_3
TC Rep_555_c_0 Rep_555_c_0_14 19775 22945 - 1.B.14.6.1
pfam Rep_555_c_0 Rep_555_c_0_15 22976 23971 - GFO_IDH_MocA
pfam Rep_555_c_0 Rep_555_c_0_16 23984 24766 - Glucosamine_iso
TC Rep_555_c_0 Rep_555_c_0_17 24919 26235 - 2.A.1.7.9
CAZyme Rep_555_c_0 Rep_555_c_0_18 26232 27572 - GH177
CAZyme Rep_555_c_0 Rep_555_c_0_19 27705 28922 - CE9
TF Rep_555_c_0 Rep_555_c_0_20 29045 30208 - HTH_AraC
pfam Rep_555_c_0 Rep_555_c_0_21 30401 31741 - OEP | OEP
TC Rep_555_c_0 Rep_555_c_0_22 31738 34767 - 2.A.6.2.33
TC Rep_555_c_0 Rep_555_c_0_23 34776 35873 - 2.A.6.2.28
pfam Rep_555_c_0 Rep_555_c_0_24 36892 40347 + DUF6383
TC Rep_555_c_0 Rep_555_c_0_25 40600 41151 - 2.A.51.1.6
TC Rep_555_c_0 Rep_555_c_0_26 41153 41683 - 2.A.51.1.6
Gene ID: Rep_555_c_0_10
Type: TC
Location: 11461 - 14748 (+)
Gene ID: Rep_555_c_0_11
Type: CAZyme
Location: 14910 - 16277 (-)
Gene ID: Rep_555_c_0_12
Type: CAZyme
Location: 16290 - 17870 (-)
Gene ID: Rep_555_c_0_13
Type: pfam
Location: 17897 - 19747 (-)
Gene ID: Rep_555_c_0_14
Type: TC
Location: 19775 - 22945 (-)
Gene ID: Rep_555_c_0_15
Type: pfam
Location: 22976 - 23971 (-)
Gene ID: Rep_555_c_0_16
Type: pfam
Location: 23984 - 24766 (-)
Gene ID: Rep_555_c_0_17
Type: TC
Location: 24919 - 26235 (-)
Gene ID: Rep_555_c_0_18
Type: CAZyme
Location: 26232 - 27572 (-)
Gene ID: Rep_555_c_0_19
Type: CAZyme
Location: 27705 - 28922 (-)
Gene ID: Rep_555_c_0_20
Type: TF
Location: 29045 - 30208 (-)
Gene ID: Rep_555_c_0_21
Type: pfam
Location: 30401 - 31741 (-)
Gene ID: Rep_555_c_0_22
Type: TC
Location: 31738 - 34767 (-)
Gene ID: Rep_555_c_0_23
Type: TC
Location: 34776 - 35873 (-)
Gene ID: Rep_555_c_0_24
Type: pfam
Location: 36892 - 40347 (+)
Gene ID: Rep_555_c_0_25
Type: TC
Location: 40600 - 41151 (-)
Gene ID: Rep_555_c_0_26
Type: TC
Location: 41153 - 41683 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_555_c_0_23 vegetarian > vegan 1.26852 0.01577
Rep_555_c_0_25 vegetarian > omnivore 1.21639 0.04149

🧭 Explore Read Mapping of CGC

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