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Cluster: Rep_553_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_553_c_34 Rep_553_c_34_26 34137 35294 + 3.A.1.13.2
TC Rep_553_c_34 Rep_553_c_34_27 35303 36340 + 3.A.1.13.2
TC Rep_553_c_34 Rep_553_c_34_28 36343 37344 + 3.A.1.13.2
pfam Rep_553_c_34 Rep_553_c_34_29 37461 37793 + DUF6922
pfam Rep_553_c_34 Rep_553_c_34_30 37790 38317 + AbiEii | AbiEii
TC Rep_553_c_34 Rep_553_c_34_31 38755 39900 + 9.B.146.1.4
pfam Rep_553_c_34 Rep_553_c_34_32 39920 41125 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
NULL(UNKNOWN) Rep_553_c_34 Rep_553_c_34_33 41226 42767 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_553_c_34 Rep_553_c_34_34 42786 43817 + GT4
NULL(UNKNOWN) Rep_553_c_34 Rep_553_c_34_35 43832 45160 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_553_c_34 Rep_553_c_34_36 45157 46206 + GT4
Gene ID: Rep_553_c_34_26
Type: TC
Location: 34137 - 35294 (+)
Gene ID: Rep_553_c_34_27
Type: TC
Location: 35303 - 36340 (+)
Gene ID: Rep_553_c_34_28
Type: TC
Location: 36343 - 37344 (+)
Gene ID: Rep_553_c_34_29
Type: pfam
Location: 37461 - 37793 (+)
Gene ID: Rep_553_c_34_30
Type: pfam
Location: 37790 - 38317 (+)
Gene ID: Rep_553_c_34_31
Type: TC
Location: 38755 - 39900 (+)
Gene ID: Rep_553_c_34_32
Type: pfam
Location: 39920 - 41125 (+)
Gene ID: Rep_553_c_34_33
Type:
Location: 41226 - 42767 (+)
Gene ID: Rep_553_c_34_34
Type: CAZyme
Location: 42786 - 43817 (+)
Gene ID: Rep_553_c_34_35
Type:
Location: 43832 - 45160 (+)
Gene ID: Rep_553_c_34_36
Type: CAZyme
Location: 45157 - 46206 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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