Cluster: Rep_541_CGC8
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_541
- CGC Family ID: CGCFAM_00823
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_541_c_2 | Rep_541_c_2_22 | 27692 | 29872 | - | PL8_3 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_23 | 29933 | 31096 | - | PL38 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_24 | 31114 | 32310 | - | GH88 |
| NULL(UNKNOWN) | Rep_541_c_2 | Rep_541_c_2_25 | 32494 | 33096 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_541_c_2 | Rep_541_c_2_26 | 33090 | 34751 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_541_c_2 | Rep_541_c_2_27 | 34764 | 37856 | - | 1.B.14.6.1 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_28 | 38162 | 39595 | - | GH29 |
| NULL(UNKNOWN) | Rep_541_c_2 | Rep_541_c_2_29 | 39599 | 41158 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_30 | 41437 | 43569 | - | GH31_14 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_31 | 43699 | 46134 | - | GH2 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_32 | 46168 | 47406 | - | PL38 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_33 | 47673 | 48836 | - | GH105 |
| TF | Rep_541_c_2 | Rep_541_c_2_34 | 49036 | 53133 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_35 | 53243 | 55477 | - | CBM67 | GH78 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_36 | 55527 | 57866 | - | GH3 |
| CAZyme | Rep_541_c_2 | Rep_541_c_2_37 | 57970 | 59166 | - | CE1 |
Gene ID: Rep_541_c_2_22
Type: CAZyme
Location: 27692 - 29872 (-)
Type: CAZyme
Location: 27692 - 29872 (-)
Gene ID: Rep_541_c_2_23
Type: CAZyme
Location: 29933 - 31096 (-)
Type: CAZyme
Location: 29933 - 31096 (-)
Gene ID: Rep_541_c_2_24
Type: CAZyme
Location: 31114 - 32310 (-)
Type: CAZyme
Location: 31114 - 32310 (-)
Gene ID: Rep_541_c_2_25
Type:
Location: 32494 - 33096 (-)
Type:
Location: 32494 - 33096 (-)
Gene ID: Rep_541_c_2_26
Type: pfam
Location: 33090 - 34751 (-)
Type: pfam
Location: 33090 - 34751 (-)
Gene ID: Rep_541_c_2_27
Type: TC
Location: 34764 - 37856 (-)
Type: TC
Location: 34764 - 37856 (-)
Gene ID: Rep_541_c_2_28
Type: CAZyme
Location: 38162 - 39595 (-)
Type: CAZyme
Location: 38162 - 39595 (-)
Gene ID: Rep_541_c_2_29
Type:
Location: 39599 - 41158 (-)
Type:
Location: 39599 - 41158 (-)
Gene ID: Rep_541_c_2_30
Type: CAZyme
Location: 41437 - 43569 (-)
Type: CAZyme
Location: 41437 - 43569 (-)
Gene ID: Rep_541_c_2_31
Type: CAZyme
Location: 43699 - 46134 (-)
Type: CAZyme
Location: 43699 - 46134 (-)
Gene ID: Rep_541_c_2_32
Type: CAZyme
Location: 46168 - 47406 (-)
Type: CAZyme
Location: 46168 - 47406 (-)
Gene ID: Rep_541_c_2_33
Type: CAZyme
Location: 47673 - 48836 (-)
Type: CAZyme
Location: 47673 - 48836 (-)
Gene ID: Rep_541_c_2_34
Type: TF
Location: 49036 - 53133 (-)
Type: TF
Location: 49036 - 53133 (-)
Gene ID: Rep_541_c_2_35
Type: CAZyme
Location: 53243 - 55477 (-)
Type: CAZyme
Location: 53243 - 55477 (-)
Gene ID: Rep_541_c_2_36
Type: CAZyme
Location: 55527 - 57866 (-)
Type: CAZyme
Location: 55527 - 57866 (-)
Gene ID: Rep_541_c_2_37
Type: CAZyme
Location: 57970 - 59166 (-)
Type: CAZyme
Location: 57970 - 59166 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.