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Cluster: Rep_541_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_22 Rep_541_c_22_10 10088 12892 + 1.B.14.12.2
pfam Rep_541_c_22 Rep_541_c_22_11 12925 13863 + Metallophos
TC Rep_541_c_22 Rep_541_c_22_12 14051 15046 + 2.A.19.5.2
NULL(UNKNOWN) Rep_541_c_22 Rep_541_c_22_13 15139 16275 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_541_c_22 Rep_541_c_22_14 16398 18251 - GH20
STP Rep_541_c_22 Rep_541_c_22_15 18436 20346 + HATPase_c
pfam Rep_541_c_22 Rep_541_c_22_16 20429 20890 + CTP_transf_like
TC Rep_541_c_22 Rep_541_c_22_17 20905 22491 + 9.B.174.1.1
pfam Rep_541_c_22 Rep_541_c_22_18 22572 23180 - PAP2 | PAP2_3
NULL(UNKNOWN) Rep_541_c_22 Rep_541_c_22_19 23571 24248 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_541_c_22 Rep_541_c_22_20 24303 26249 + 3.D.10.1.5
TC Rep_541_c_22 Rep_541_c_22_21 26284 27039 + 3.D.10.1.5
pfam Rep_541_c_22 Rep_541_c_22_22 27688 29004 + PepSY_like | PepSY_like | PepSY_like
TC Rep_541_c_22 Rep_541_c_22_23 29177 30295 - 3.A.11.1.3
Gene ID: Rep_541_c_22_10
Type: TC
Location: 10088 - 12892 (+)
Gene ID: Rep_541_c_22_11
Type: pfam
Location: 12925 - 13863 (+)
Gene ID: Rep_541_c_22_12
Type: TC
Location: 14051 - 15046 (+)
Gene ID: Rep_541_c_22_13
Type:
Location: 15139 - 16275 (+)
Gene ID: Rep_541_c_22_14
Type: CAZyme
Location: 16398 - 18251 (-)
Gene ID: Rep_541_c_22_15
Type: STP
Location: 18436 - 20346 (+)
Gene ID: Rep_541_c_22_16
Type: pfam
Location: 20429 - 20890 (+)
Gene ID: Rep_541_c_22_17
Type: TC
Location: 20905 - 22491 (+)
Gene ID: Rep_541_c_22_18
Type: pfam
Location: 22572 - 23180 (-)
Gene ID: Rep_541_c_22_19
Type:
Location: 23571 - 24248 (+)
Gene ID: Rep_541_c_22_20
Type: TC
Location: 24303 - 26249 (+)
Gene ID: Rep_541_c_22_21
Type: TC
Location: 26284 - 27039 (+)
Gene ID: Rep_541_c_22_22
Type: pfam
Location: 27688 - 29004 (+)
Gene ID: Rep_541_c_22_23
Type: TC
Location: 29177 - 30295 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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