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Cluster: Rep_541_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_6 Rep_541_c_6_15 16714 19830 + 1.B.14.6.1
pfam Rep_541_c_6 Rep_541_c_6_16 19882 21657 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_541_c_6 Rep_541_c_6_17 21911 24271 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_541_c_6 Rep_541_c_6_18 24393 26237 + GH32
CAZyme Rep_541_c_6 Rep_541_c_6_19 26259 28451 + GH36
TC Rep_541_c_6 Rep_541_c_6_20 28497 29663 + 2.A.1.7.17
STP Rep_541_c_6 Rep_541_c_6_21 29685 30656 + PfkB
TF Rep_541_c_6 Rep_541_c_6_22 30718 33471 + HTH_AraC
TC Rep_541_c_6 Rep_541_c_6_23 33527 34765 + 9.B.10.1.1
Gene ID: Rep_541_c_6_15
Type: TC
Location: 16714 - 19830 (+)
Gene ID: Rep_541_c_6_16
Type: pfam
Location: 19882 - 21657 (+)
Gene ID: Rep_541_c_6_17
Type:
Location: 21911 - 24271 (+)
Gene ID: Rep_541_c_6_18
Type: CAZyme
Location: 24393 - 26237 (+)
Gene ID: Rep_541_c_6_19
Type: CAZyme
Location: 26259 - 28451 (+)
Gene ID: Rep_541_c_6_20
Type: TC
Location: 28497 - 29663 (+)
Gene ID: Rep_541_c_6_21
Type: STP
Location: 29685 - 30656 (+)
Gene ID: Rep_541_c_6_22
Type: TF
Location: 30718 - 33471 (+)
Gene ID: Rep_541_c_6_23
Type: TC
Location: 33527 - 34765 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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