Cluster: Rep_534_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_534
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_3 | Rep_534_c_3_26 | 36045 | 37862 | - | 8.A.46.1.3 |
| TC | Rep_534_c_3 | Rep_534_c_3_27 | 37895 | 41122 | - | 1.B.14.6.1 |
| CAZyme | Rep_534_c_3 | Rep_534_c_3_28 | 41413 | 42873 | - | PL1_2 |
| CAZyme | Rep_534_c_3 | Rep_534_c_3_29 | 42905 | 44458 | - | PL1_2 |
| pfam | Rep_534_c_3 | Rep_534_c_3_30 | 45475 | 46836 | + | UPF0004 | TRAM | Radical_SAM | TRAM_2 |
| NULL(UNKNOWN) | Rep_534_c_3 | Rep_534_c_3_31 | 47640 | 48623 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_534_c_3 | Rep_534_c_3_32 | 48703 | 52083 | + | 1.B.14.6.1 |
Gene ID: Rep_534_c_3_26
Type: TC
Location: 36045 - 37862 (-)
Type: TC
Location: 36045 - 37862 (-)
Gene ID: Rep_534_c_3_27
Type: TC
Location: 37895 - 41122 (-)
Type: TC
Location: 37895 - 41122 (-)
Gene ID: Rep_534_c_3_28
Type: CAZyme
Location: 41413 - 42873 (-)
Type: CAZyme
Location: 41413 - 42873 (-)
Gene ID: Rep_534_c_3_29
Type: CAZyme
Location: 42905 - 44458 (-)
Type: CAZyme
Location: 42905 - 44458 (-)
Gene ID: Rep_534_c_3_30
Type: pfam
Location: 45475 - 46836 (+)
Type: pfam
Location: 45475 - 46836 (+)
Gene ID: Rep_534_c_3_31
Type:
Location: 47640 - 48623 (+)
Type:
Location: 47640 - 48623 (+)
Gene ID: Rep_534_c_3_32
Type: TC
Location: 48703 - 52083 (+)
Type: TC
Location: 48703 - 52083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.