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Cluster: Rep_534_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_534_c_3 Rep_534_c_3_1 129 1277 - 3.D.4.3.2
TC Rep_534_c_3 Rep_534_c_3_2 1418 2989 - 3.D.4.3.2
pfam Rep_534_c_3 Rep_534_c_3_3 3129 3704 - RNase_HII
NULL(UNKNOWN) Rep_534_c_3 Rep_534_c_3_4 3821 4333 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_534_c_3 Rep_534_c_3_5 4618 5928 - CE8
NULL(UNKNOWN) Rep_534_c_3 Rep_534_c_3_6 5957 6205 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_534_c_3 Rep_534_c_3_7 6295 8763 - GH95
CAZyme Rep_534_c_3 Rep_534_c_3_8 8791 10377 - PL1_2
pfam Rep_534_c_3 Rep_534_c_3_9 10422 12128 - DUF4957 | DUF5123
sulfatase Rep_534_c_3 Rep_534_c_3_10 12143 14224 - S1_27
TC Rep_534_c_3 Rep_534_c_3_11 14237 17476 - 1.B.14.6.1
CAZyme Rep_534_c_3 Rep_534_c_3_12 17746 19257 - PL1_2
TF Rep_534_c_3 Rep_534_c_3_13 19415 23728 - HTH_AraC
pfam Rep_534_c_3 Rep_534_c_3_14 23844 24128 + Lys_export
TC Rep_534_c_3 Rep_534_c_3_15 24125 24724 + 2.A.124.1.2
STP Rep_534_c_3 Rep_534_c_3_16 25075 25734 + TetR_N
pfam Rep_534_c_3 Rep_534_c_3_17 25866 26876 - Semialdhyde_dh | Semialdhyde_dhC
TC Rep_534_c_3 Rep_534_c_3_18 27028 29166 + 2.A.37.2.5
pfam Rep_534_c_3 Rep_534_c_3_19 29166 29891 + ThiF
TC Rep_534_c_3 Rep_534_c_3_20 29888 30571 + 3.A.1.122.2
Gene ID: Rep_534_c_3_1
Type: TC
Location: 129 - 1277 (-)
Gene ID: Rep_534_c_3_2
Type: TC
Location: 1418 - 2989 (-)
Gene ID: Rep_534_c_3_3
Type: pfam
Location: 3129 - 3704 (-)
Gene ID: Rep_534_c_3_4
Type:
Location: 3821 - 4333 (-)
Gene ID: Rep_534_c_3_5
Type: CAZyme
Location: 4618 - 5928 (-)
Gene ID: Rep_534_c_3_6
Type:
Location: 5957 - 6205 (+)
Gene ID: Rep_534_c_3_7
Type: CAZyme
Location: 6295 - 8763 (-)
Gene ID: Rep_534_c_3_8
Type: CAZyme
Location: 8791 - 10377 (-)
Gene ID: Rep_534_c_3_9
Type: pfam
Location: 10422 - 12128 (-)
Gene ID: Rep_534_c_3_10
Type: sulfatase
Location: 12143 - 14224 (-)
Gene ID: Rep_534_c_3_11
Type: TC
Location: 14237 - 17476 (-)
Gene ID: Rep_534_c_3_12
Type: CAZyme
Location: 17746 - 19257 (-)
Gene ID: Rep_534_c_3_13
Type: TF
Location: 19415 - 23728 (-)
Gene ID: Rep_534_c_3_14
Type: pfam
Location: 23844 - 24128 (+)
Gene ID: Rep_534_c_3_15
Type: TC
Location: 24125 - 24724 (+)
Gene ID: Rep_534_c_3_16
Type: STP
Location: 25075 - 25734 (+)
Gene ID: Rep_534_c_3_17
Type: pfam
Location: 25866 - 26876 (-)
Gene ID: Rep_534_c_3_18
Type: TC
Location: 27028 - 29166 (+)
Gene ID: Rep_534_c_3_19
Type: pfam
Location: 29166 - 29891 (+)
Gene ID: Rep_534_c_3_20
Type: TC
Location: 29888 - 30571 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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