Cluster: Rep_534_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_534
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_20 | Rep_534_c_20_28 | 25868 | 27226 | - | 2.A.1.53.5 |
| pfam | Rep_534_c_20 | Rep_534_c_20_29 | 27599 | 28963 | + | HGTP_anticodon | tRNA-synt_His |
| pfam | Rep_534_c_20 | Rep_534_c_20_30 | 29207 | 29671 | + | dCMP_cyt_deam_1 | MafB19-deam |
| TC | Rep_534_c_20 | Rep_534_c_20_31 | 29763 | 31232 | - | 2.A.1.14.2 |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_32 | 31410 | 32624 | + | GH105 |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_33 | 32753 | 33718 | + | CE8 |
Gene ID: Rep_534_c_20_28
Type: TC
Location: 25868 - 27226 (-)
Type: TC
Location: 25868 - 27226 (-)
Gene ID: Rep_534_c_20_29
Type: pfam
Location: 27599 - 28963 (+)
Type: pfam
Location: 27599 - 28963 (+)
Gene ID: Rep_534_c_20_30
Type: pfam
Location: 29207 - 29671 (+)
Type: pfam
Location: 29207 - 29671 (+)
Gene ID: Rep_534_c_20_31
Type: TC
Location: 29763 - 31232 (-)
Type: TC
Location: 29763 - 31232 (-)
Gene ID: Rep_534_c_20_32
Type: CAZyme
Location: 31410 - 32624 (+)
Type: CAZyme
Location: 31410 - 32624 (+)
Gene ID: Rep_534_c_20_33
Type: CAZyme
Location: 32753 - 33718 (+)
Type: CAZyme
Location: 32753 - 33718 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.