Cluster: Rep_534_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_534
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_1 | Rep_534_c_1_87 | 115491 | 116126 | + | 9.B.27.2.3 |
| CAZyme | Rep_534_c_1 | Rep_534_c_1_88 | 116396 | 118138 | + | PL1_2 |
| pfam | Rep_534_c_1 | Rep_534_c_1_89 | 118149 | 118823 | + | DUF3826 |
| TC | Rep_534_c_1 | Rep_534_c_1_90 | 119475 | 121340 | - | 1.I.1.1.3 |
| pfam | Rep_534_c_1 | Rep_534_c_1_91 | 121540 | 122709 | + | AAA_14 | DUF4143 |
| pfam | Rep_534_c_1 | Rep_534_c_1_92 | 123414 | 124844 | + | DUF4957 | DUF4992 | DUF5123 |
| TC | Rep_534_c_1 | Rep_534_c_1_93 | 124895 | 128215 | + | 1.B.14.6.1 |
Gene ID: Rep_534_c_1_87
Type: TC
Location: 115491 - 116126 (+)
Type: TC
Location: 115491 - 116126 (+)
Gene ID: Rep_534_c_1_88
Type: CAZyme
Location: 116396 - 118138 (+)
Type: CAZyme
Location: 116396 - 118138 (+)
Gene ID: Rep_534_c_1_89
Type: pfam
Location: 118149 - 118823 (+)
Type: pfam
Location: 118149 - 118823 (+)
Gene ID: Rep_534_c_1_90
Type: TC
Location: 119475 - 121340 (-)
Type: TC
Location: 119475 - 121340 (-)
Gene ID: Rep_534_c_1_91
Type: pfam
Location: 121540 - 122709 (+)
Type: pfam
Location: 121540 - 122709 (+)
Gene ID: Rep_534_c_1_92
Type: pfam
Location: 123414 - 124844 (+)
Type: pfam
Location: 123414 - 124844 (+)
Gene ID: Rep_534_c_1_93
Type: TC
Location: 124895 - 128215 (+)
Type: TC
Location: 124895 - 128215 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.