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Cluster: Rep_534_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_534_c_18 Rep_534_c_18_12 10976 12328 + 2.A.66.1.47
STP Rep_534_c_18 Rep_534_c_18_13 12312 14852 + HATPase_c | HisKA | Response_reg
TF Rep_534_c_18 Rep_534_c_18_14 14894 16264 + HTH_8
CAZyme Rep_534_c_18 Rep_534_c_18_15 16932 18365 + GH28
STP Rep_534_c_18 Rep_534_c_18_16 18471 19295 + PfkB
pfam Rep_534_c_18 Rep_534_c_18_17 19374 20264 + Acyl_transf_1
CAZyme Rep_534_c_18 Rep_534_c_18_18 20282 21979 + GH13_38
TC Rep_534_c_18 Rep_534_c_18_19 22663 23739 + 2.A.98.1.3
Gene ID: Rep_534_c_18_12
Type: TC
Location: 10976 - 12328 (+)
Gene ID: Rep_534_c_18_13
Type: STP
Location: 12312 - 14852 (+)
Gene ID: Rep_534_c_18_14
Type: TF
Location: 14894 - 16264 (+)
Gene ID: Rep_534_c_18_15
Type: CAZyme
Location: 16932 - 18365 (+)
Gene ID: Rep_534_c_18_16
Type: STP
Location: 18471 - 19295 (+)
Gene ID: Rep_534_c_18_17
Type: pfam
Location: 19374 - 20264 (+)
Gene ID: Rep_534_c_18_18
Type: CAZyme
Location: 20282 - 21979 (+)
Gene ID: Rep_534_c_18_19
Type: TC
Location: 22663 - 23739 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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