Cluster: Rep_534_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_534
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_15 | Rep_534_c_15_20 | 26011 | 27567 | + | 1.B.9.4.2 |
| pfam | Rep_534_c_15 | Rep_534_c_15_21 | 27661 | 29034 | - | ATP_bind_3 | TilS_C |
| TC | Rep_534_c_15 | Rep_534_c_15_22 | 29248 | 31737 | + | 9.A.8.1.6 |
| NULL(UNKNOWN) | Rep_534_c_15 | Rep_534_c_15_23 | 31762 | 31974 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_534_c_15 | Rep_534_c_15_24 | 32523 | 34376 | + | GH141 |
| CAZyme | Rep_534_c_15 | Rep_534_c_15_25 | 34395 | 36638 | + | GH31_3 |
| STP | Rep_534_c_15 | Rep_534_c_15_26 | 36708 | 38513 | + | B12-binding | B12-binding_2 |
| NULL(UNKNOWN) | Rep_534_c_15 | Rep_534_c_15_27 | 38529 | 38657 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_534_c_15 | Rep_534_c_15_28 | 38688 | 40256 | + | 2.A.21.3.19 |
| CAZyme | Rep_534_c_15 | Rep_534_c_15_29 | 40346 | 41629 | + | PL42 |
| STP | Rep_534_c_15 | Rep_534_c_15_30 | 41733 | 42617 | - | PfkB |
| pfam | Rep_534_c_15 | Rep_534_c_15_31 | 42720 | 46091 | - | DEAD | AAA_11 | AAA_11 | AAA_12 | AAA_19 |
| CAZyme | Rep_534_c_15 | Rep_534_c_15_32 | 46100 | 47479 | - | GH23 |
Gene ID: Rep_534_c_15_20
Type: TC
Location: 26011 - 27567 (+)
Type: TC
Location: 26011 - 27567 (+)
Gene ID: Rep_534_c_15_21
Type: pfam
Location: 27661 - 29034 (-)
Type: pfam
Location: 27661 - 29034 (-)
Gene ID: Rep_534_c_15_22
Type: TC
Location: 29248 - 31737 (+)
Type: TC
Location: 29248 - 31737 (+)
Gene ID: Rep_534_c_15_23
Type:
Location: 31762 - 31974 (+)
Type:
Location: 31762 - 31974 (+)
Gene ID: Rep_534_c_15_24
Type: CAZyme
Location: 32523 - 34376 (+)
Type: CAZyme
Location: 32523 - 34376 (+)
Gene ID: Rep_534_c_15_25
Type: CAZyme
Location: 34395 - 36638 (+)
Type: CAZyme
Location: 34395 - 36638 (+)
Gene ID: Rep_534_c_15_26
Type: STP
Location: 36708 - 38513 (+)
Type: STP
Location: 36708 - 38513 (+)
Gene ID: Rep_534_c_15_27
Type:
Location: 38529 - 38657 (+)
Type:
Location: 38529 - 38657 (+)
Gene ID: Rep_534_c_15_28
Type: TC
Location: 38688 - 40256 (+)
Type: TC
Location: 38688 - 40256 (+)
Gene ID: Rep_534_c_15_29
Type: CAZyme
Location: 40346 - 41629 (+)
Type: CAZyme
Location: 40346 - 41629 (+)
Gene ID: Rep_534_c_15_30
Type: STP
Location: 41733 - 42617 (-)
Type: STP
Location: 41733 - 42617 (-)
Gene ID: Rep_534_c_15_31
Type: pfam
Location: 42720 - 46091 (-)
Type: pfam
Location: 42720 - 46091 (-)
Gene ID: Rep_534_c_15_32
Type: CAZyme
Location: 46100 - 47479 (-)
Type: CAZyme
Location: 46100 - 47479 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.