Cluster: Rep_534_CGC21
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_534
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_534_c_13 | Rep_534_c_13_16 | 20791 | 23796 | + | GH2 |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_17 | 23793 | 25475 | + | CE12 | CE12 |
| pfam | Rep_534_c_13 | Rep_534_c_13_18 | 25749 | 29054 | + | HRDC | UvrD-helicase | AAA_19 | UvrD_C |
| pfam | Rep_534_c_13 | Rep_534_c_13_19 | 29128 | 30150 | - | PepSY_like | PepSY_like |
| TC | Rep_534_c_13 | Rep_534_c_13_20 | 30827 | 33928 | + | 1.B.14.6.1 |
| pfam | Rep_534_c_13 | Rep_534_c_13_21 | 33941 | 35731 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_534_c_13 | Rep_534_c_13_22 | 35746 | 36630 | + | Exo_endo_phos |
| TC | Rep_534_c_13 | Rep_534_c_13_23 | 36953 | 37900 | + | 1.B.48.1.5 |
| pfam | Rep_534_c_13 | Rep_534_c_13_24 | 37897 | 38250 | + | DUF4810 |
| pfam | Rep_534_c_13 | Rep_534_c_13_25 | 38247 | 38933 | + | GNA1162-like |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_26 | 38976 | 40958 | - | GH51_2 |
| TF | Rep_534_c_13 | Rep_534_c_13_27 | 41449 | 45516 | - | HTH_AraC |
| TC | Rep_534_c_13 | Rep_534_c_13_28 | 45844 | 49107 | + | 1.B.14.6.1 |
| TC | Rep_534_c_13 | Rep_534_c_13_29 | 49128 | 51107 | + | 8.A.46.1.1 |
| NULL(UNKNOWN) | Rep_534_c_13 | Rep_534_c_13_30 | 51602 | 51724 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_31 | 52043 | 52891 | + | GH16_3 |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_32 | 52916 | 54889 | + | GH97 |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_33 | 55261 | 57609 | - | GH35 |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_34 | 57650 | 60148 | - | GH51_2 |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_35 | 60157 | 62079 | - | GH43_19 | GH43_34 |
| CAZyme | Rep_534_c_13 | Rep_534_c_13_36 | 62366 | 63502 | - | GH43_24 |
Gene ID: Rep_534_c_13_16
Type: CAZyme
Location: 20791 - 23796 (+)
Type: CAZyme
Location: 20791 - 23796 (+)
Gene ID: Rep_534_c_13_17
Type: CAZyme
Location: 23793 - 25475 (+)
Type: CAZyme
Location: 23793 - 25475 (+)
Gene ID: Rep_534_c_13_18
Type: pfam
Location: 25749 - 29054 (+)
Type: pfam
Location: 25749 - 29054 (+)
Gene ID: Rep_534_c_13_19
Type: pfam
Location: 29128 - 30150 (-)
Type: pfam
Location: 29128 - 30150 (-)
Gene ID: Rep_534_c_13_20
Type: TC
Location: 30827 - 33928 (+)
Type: TC
Location: 30827 - 33928 (+)
Gene ID: Rep_534_c_13_21
Type: pfam
Location: 33941 - 35731 (+)
Type: pfam
Location: 33941 - 35731 (+)
Gene ID: Rep_534_c_13_22
Type: pfam
Location: 35746 - 36630 (+)
Type: pfam
Location: 35746 - 36630 (+)
Gene ID: Rep_534_c_13_23
Type: TC
Location: 36953 - 37900 (+)
Type: TC
Location: 36953 - 37900 (+)
Gene ID: Rep_534_c_13_24
Type: pfam
Location: 37897 - 38250 (+)
Type: pfam
Location: 37897 - 38250 (+)
Gene ID: Rep_534_c_13_25
Type: pfam
Location: 38247 - 38933 (+)
Type: pfam
Location: 38247 - 38933 (+)
Gene ID: Rep_534_c_13_26
Type: CAZyme
Location: 38976 - 40958 (-)
Type: CAZyme
Location: 38976 - 40958 (-)
Gene ID: Rep_534_c_13_27
Type: TF
Location: 41449 - 45516 (-)
Type: TF
Location: 41449 - 45516 (-)
Gene ID: Rep_534_c_13_28
Type: TC
Location: 45844 - 49107 (+)
Type: TC
Location: 45844 - 49107 (+)
Gene ID: Rep_534_c_13_29
Type: TC
Location: 49128 - 51107 (+)
Type: TC
Location: 49128 - 51107 (+)
Gene ID: Rep_534_c_13_30
Type:
Location: 51602 - 51724 (+)
Type:
Location: 51602 - 51724 (+)
Gene ID: Rep_534_c_13_31
Type: CAZyme
Location: 52043 - 52891 (+)
Type: CAZyme
Location: 52043 - 52891 (+)
Gene ID: Rep_534_c_13_32
Type: CAZyme
Location: 52916 - 54889 (+)
Type: CAZyme
Location: 52916 - 54889 (+)
Gene ID: Rep_534_c_13_33
Type: CAZyme
Location: 55261 - 57609 (-)
Type: CAZyme
Location: 55261 - 57609 (-)
Gene ID: Rep_534_c_13_34
Type: CAZyme
Location: 57650 - 60148 (-)
Type: CAZyme
Location: 57650 - 60148 (-)
Gene ID: Rep_534_c_13_35
Type: CAZyme
Location: 60157 - 62079 (-)
Type: CAZyme
Location: 60157 - 62079 (-)
Gene ID: Rep_534_c_13_36
Type: CAZyme
Location: 62366 - 63502 (-)
Type: CAZyme
Location: 62366 - 63502 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.