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Cluster: Rep_534_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_534_c_12 Rep_534_c_12_27 28643 29539 + 3.A.1.105.16
TC Rep_534_c_12 Rep_534_c_12_28 29552 30478 + 3.A.1.105.15
TC Rep_534_c_12 Rep_534_c_12_29 30468 31214 + 3.A.1.105.15
TC Rep_534_c_12 Rep_534_c_12_30 31237 32349 + 3.A.1.105.15
TC Rep_534_c_12 Rep_534_c_12_31 32346 33476 + 3.A.1.105.4
pfam Rep_534_c_12 Rep_534_c_12_32 33860 35377 + tRNA-synt_1c | Anticodon_2
CAZyme Rep_534_c_12 Rep_534_c_12_33 35393 36610 + GT30
TC Rep_534_c_12 Rep_534_c_12_34 36759 37946 + 2.A.23.2.7
Gene ID: Rep_534_c_12_27
Type: TC
Location: 28643 - 29539 (+)
Gene ID: Rep_534_c_12_28
Type: TC
Location: 29552 - 30478 (+)
Gene ID: Rep_534_c_12_29
Type: TC
Location: 30468 - 31214 (+)
Gene ID: Rep_534_c_12_30
Type: TC
Location: 31237 - 32349 (+)
Gene ID: Rep_534_c_12_31
Type: TC
Location: 32346 - 33476 (+)
Gene ID: Rep_534_c_12_32
Type: pfam
Location: 33860 - 35377 (+)
Gene ID: Rep_534_c_12_33
Type: CAZyme
Location: 35393 - 36610 (+)
Gene ID: Rep_534_c_12_34
Type: TC
Location: 36759 - 37946 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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