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Cluster: Rep_534_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_534_c_9 Rep_534_c_9_2 1343 4453 - 2.A.6.1.5
pfam Rep_534_c_9 Rep_534_c_9_3 4471 5709 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_534_c_9 Rep_534_c_9_4 6506 8038 - 2.A.17.1.6
pfam Rep_534_c_9 Rep_534_c_9_5 8108 8692 - tRNA_edit
pfam Rep_534_c_9 Rep_534_c_9_6 8689 11577 - UvrA_DNA-bind | UvrA_inter
CAZyme Rep_534_c_9 Rep_534_c_9_7 11716 13515 + CBM50 | CBM50 | CBM50
pfam Rep_534_c_9 Rep_534_c_9_8 13512 14219 + OMP_b-brl_2
STP Rep_534_c_9 Rep_534_c_9_9 15013 15603 + FecR
TC Rep_534_c_9 Rep_534_c_9_10 15618 17162 + 1.B.14.6.1
Gene ID: Rep_534_c_9_2
Type: TC
Location: 1343 - 4453 (-)
Gene ID: Rep_534_c_9_3
Type: pfam
Location: 4471 - 5709 (-)
Gene ID: Rep_534_c_9_4
Type: TC
Location: 6506 - 8038 (-)
Gene ID: Rep_534_c_9_5
Type: pfam
Location: 8108 - 8692 (-)
Gene ID: Rep_534_c_9_6
Type: pfam
Location: 8689 - 11577 (-)
Gene ID: Rep_534_c_9_7
Type: CAZyme
Location: 11716 - 13515 (+)
Gene ID: Rep_534_c_9_8
Type: pfam
Location: 13512 - 14219 (+)
Gene ID: Rep_534_c_9_9
Type: STP
Location: 15013 - 15603 (+)
Gene ID: Rep_534_c_9_10
Type: TC
Location: 15618 - 17162 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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