Cluster: Rep_534_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_534
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_4 | Rep_534_c_4_89 | 114786 | 116123 | + | 2.A.1.4.3 |
| pfam | Rep_534_c_4 | Rep_534_c_4_90 | 116159 | 117589 | + | GDPD |
| NULL(UNKNOWN) | Rep_534_c_4 | Rep_534_c_4_91 | 117621 | 118961 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_534_c_4 | Rep_534_c_4_92 | 119591 | 120580 | + | GT2 |
| pfam | Rep_534_c_4 | Rep_534_c_4_93 | 120605 | 121297 | + | RadC | UPF0758_N |
| TC | Rep_534_c_4 | Rep_534_c_4_94 | 121374 | 122552 | - | 8.A.46.3.3 |
Gene ID: Rep_534_c_4_89
Type: TC
Location: 114786 - 116123 (+)
Type: TC
Location: 114786 - 116123 (+)
Gene ID: Rep_534_c_4_90
Type: pfam
Location: 116159 - 117589 (+)
Type: pfam
Location: 116159 - 117589 (+)
Gene ID: Rep_534_c_4_91
Type:
Location: 117621 - 118961 (+)
Type:
Location: 117621 - 118961 (+)
Gene ID: Rep_534_c_4_92
Type: CAZyme
Location: 119591 - 120580 (+)
Type: CAZyme
Location: 119591 - 120580 (+)
Gene ID: Rep_534_c_4_93
Type: pfam
Location: 120605 - 121297 (+)
Type: pfam
Location: 120605 - 121297 (+)
Gene ID: Rep_534_c_4_94
Type: TC
Location: 121374 - 122552 (-)
Type: TC
Location: 121374 - 122552 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.