Cluster: Rep_531_CGC55
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_531
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_531_c_39 | Rep_531_c_39_10 | 9678 | 10778 | + | 1.B.14.6.1 |
| pfam | Rep_531_c_39 | Rep_531_c_39_11 | 10775 | 12847 | + | TonB_dep_Rec_b-barrel |
| pfam | Rep_531_c_39 | Rep_531_c_39_12 | 12863 | 14683 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_531_c_39 | Rep_531_c_39_13 | 14804 | 16582 | + | GH110 |
| TC | Rep_531_c_39 | Rep_531_c_39_14 | 16658 | 18352 | - | 2.A.58.2.2 |
Gene ID: Rep_531_c_39_10
Type: TC
Location: 9678 - 10778 (+)
Type: TC
Location: 9678 - 10778 (+)
Gene ID: Rep_531_c_39_11
Type: pfam
Location: 10775 - 12847 (+)
Type: pfam
Location: 10775 - 12847 (+)
Gene ID: Rep_531_c_39_12
Type: pfam
Location: 12863 - 14683 (+)
Type: pfam
Location: 12863 - 14683 (+)
Gene ID: Rep_531_c_39_13
Type: CAZyme
Location: 14804 - 16582 (+)
Type: CAZyme
Location: 14804 - 16582 (+)
Gene ID: Rep_531_c_39_14
Type: TC
Location: 16658 - 18352 (-)
Type: TC
Location: 16658 - 18352 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola fibrisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.