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Cluster: Rep_531_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_531_c_20 Rep_531_c_20_1 380 1201 + 1.A.30.1.5
NULL(UNKNOWN) Rep_531_c_20 Rep_531_c_20_2 1243 2844 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_531_c_20 Rep_531_c_20_3 2841 5123 - Hepar_II_III_C | DUF4962
CAZyme Rep_531_c_20 Rep_531_c_20_4 5298 8408 - GH2
pfam Rep_531_c_20 Rep_531_c_20_5 8500 10434 - SusD_RagB | SusD-like_3
TC Rep_531_c_20 Rep_531_c_20_6 10480 13857 - 1.B.14.6.1
TF Rep_531_c_20 Rep_531_c_20_7 13867 14382 - GerE
TF Rep_531_c_20 Rep_531_c_20_8 14593 17403 - 0035607
CAZyme Rep_531_c_20 Rep_531_c_20_9 17547 19475 - GH146
CAZyme Rep_531_c_20 Rep_531_c_20_10 19498 20970 - GH28
Gene ID: Rep_531_c_20_1
Type: TC
Location: 380 - 1201 (+)
Gene ID: Rep_531_c_20_2
Type:
Location: 1243 - 2844 (-)
Gene ID: Rep_531_c_20_3
Type: pfam
Location: 2841 - 5123 (-)
Gene ID: Rep_531_c_20_4
Type: CAZyme
Location: 5298 - 8408 (-)
Gene ID: Rep_531_c_20_5
Type: pfam
Location: 8500 - 10434 (-)
Gene ID: Rep_531_c_20_6
Type: TC
Location: 10480 - 13857 (-)
Gene ID: Rep_531_c_20_7
Type: TF
Location: 13867 - 14382 (-)
Gene ID: Rep_531_c_20_8
Type: TF
Location: 14593 - 17403 (-)
Gene ID: Rep_531_c_20_9
Type: CAZyme
Location: 17547 - 19475 (-)
Gene ID: Rep_531_c_20_10
Type: CAZyme
Location: 19498 - 20970 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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