Cluster: Rep_531_CGC32
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 8
- Substrate: host glycan
- Genome ID: Rep_531
- CGC Family ID: CGCFAM_00016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_531_c_19 | Rep_531_c_19_34 | 39818 | 40669 | + | GH2 |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_35 | 40669 | 42063 | + | GH2 |
| pfam | Rep_531_c_19 | Rep_531_c_19_36 | 42293 | 42964 | + | DUF4627 |
| pfam | Rep_531_c_19 | Rep_531_c_19_37 | 43339 | 43563 | + | TatA_B_E |
| TC | Rep_531_c_19 | Rep_531_c_19_38 | 43593 | 44402 | + | 2.A.64.3.2 |
| NULL(UNKNOWN) | Rep_531_c_19 | Rep_531_c_19_39 | 44473 | 44622 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_531_c_19 | Rep_531_c_19_40 | 44557 | 45900 | - | F5_F8_type_C | DUF4989 |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_41 | 45910 | 47340 | - | GH18 |
| pfam | Rep_531_c_19 | Rep_531_c_19_42 | 47371 | 48516 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_531_c_19 | Rep_531_c_19_43 | 48526 | 49620 | - | GH18_BT1044-like |
| TC | Rep_531_c_19 | Rep_531_c_19_44 | 49646 | 51235 | - | 8.A.46.2.2 |
| TC | Rep_531_c_19 | Rep_531_c_19_45 | 51248 | 54661 | - | 1.B.14.6.13 |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_46 | 54848 | 57076 | - | GH92 |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_47 | 57144 | 58115 | - | GH130_2 |
| pfam | Rep_531_c_19 | Rep_531_c_19_48 | 58133 | 59482 | - | MFS_1 | MFS_1 |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_49 | 59489 | 61789 | - | GH92 |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_50 | 61846 | 64107 | - | GH92 |
| STP | Rep_531_c_19 | Rep_531_c_19_51 | 64124 | 65098 | - | FecR |
| CAZyme | Rep_531_c_19 | Rep_531_c_19_52 | 65173 | 67374 | - | GH92 |
Gene ID: Rep_531_c_19_34
Type: CAZyme
Location: 39818 - 40669 (+)
Type: CAZyme
Location: 39818 - 40669 (+)
Gene ID: Rep_531_c_19_35
Type: CAZyme
Location: 40669 - 42063 (+)
Type: CAZyme
Location: 40669 - 42063 (+)
Gene ID: Rep_531_c_19_36
Type: pfam
Location: 42293 - 42964 (+)
Type: pfam
Location: 42293 - 42964 (+)
Gene ID: Rep_531_c_19_37
Type: pfam
Location: 43339 - 43563 (+)
Type: pfam
Location: 43339 - 43563 (+)
Gene ID: Rep_531_c_19_38
Type: TC
Location: 43593 - 44402 (+)
Type: TC
Location: 43593 - 44402 (+)
Gene ID: Rep_531_c_19_39
Type:
Location: 44473 - 44622 (+)
Type:
Location: 44473 - 44622 (+)
Gene ID: Rep_531_c_19_40
Type: pfam
Location: 44557 - 45900 (-)
Type: pfam
Location: 44557 - 45900 (-)
Gene ID: Rep_531_c_19_41
Type: CAZyme
Location: 45910 - 47340 (-)
Type: CAZyme
Location: 45910 - 47340 (-)
Gene ID: Rep_531_c_19_42
Type: pfam
Location: 47371 - 48516 (-)
Type: pfam
Location: 47371 - 48516 (-)
Gene ID: Rep_531_c_19_43
Type: pfam
Location: 48526 - 49620 (-)
Type: pfam
Location: 48526 - 49620 (-)
Gene ID: Rep_531_c_19_44
Type: TC
Location: 49646 - 51235 (-)
Type: TC
Location: 49646 - 51235 (-)
Gene ID: Rep_531_c_19_45
Type: TC
Location: 51248 - 54661 (-)
Type: TC
Location: 51248 - 54661 (-)
Gene ID: Rep_531_c_19_46
Type: CAZyme
Location: 54848 - 57076 (-)
Type: CAZyme
Location: 54848 - 57076 (-)
Gene ID: Rep_531_c_19_47
Type: CAZyme
Location: 57144 - 58115 (-)
Type: CAZyme
Location: 57144 - 58115 (-)
Gene ID: Rep_531_c_19_48
Type: pfam
Location: 58133 - 59482 (-)
Type: pfam
Location: 58133 - 59482 (-)
Gene ID: Rep_531_c_19_49
Type: CAZyme
Location: 59489 - 61789 (-)
Type: CAZyme
Location: 59489 - 61789 (-)
Gene ID: Rep_531_c_19_50
Type: CAZyme
Location: 61846 - 64107 (-)
Type: CAZyme
Location: 61846 - 64107 (-)
Gene ID: Rep_531_c_19_51
Type: STP
Location: 64124 - 65098 (-)
Type: STP
Location: 64124 - 65098 (-)
Gene ID: Rep_531_c_19_52
Type: CAZyme
Location: 65173 - 67374 (-)
Type: CAZyme
Location: 65173 - 67374 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola fibrisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.