Cluster: Rep_531_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_531
- CGC Family ID: CGCFAM_06353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_531_c_2 | Rep_531_c_2_10 | 11568 | 12731 | - | GT4 |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_11 | 12736 | 13548 | - | GT2 |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_12 | 13530 | 14483 | - | GT8 |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_13 | 14488 | 15507 | - | GT113 |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_14 | 15749 | 16894 | + | GT4 |
| pfam | Rep_531_c_2 | Rep_531_c_2_15 | 16891 | 17646 | + | Kdo |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_16 | 17654 | 18388 | + | GT32 |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_17 | 18394 | 19134 | + | GT2 |
| pfam | Rep_531_c_2 | Rep_531_c_2_18 | 19158 | 20063 | - | Lip_A_acyltrans |
| TC | Rep_531_c_2 | Rep_531_c_2_19 | 20186 | 22024 | + | 3.A.1.135.5 |
| CAZyme | Rep_531_c_2 | Rep_531_c_2_20 | 22042 | 22950 | - | GT9 |
| pfam | Rep_531_c_2 | Rep_531_c_2_21 | 23090 | 23695 | - | DUF4254 |
| pfam | Rep_531_c_2 | Rep_531_c_2_22 | 23834 | 24844 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| TC | Rep_531_c_2 | Rep_531_c_2_23 | 25002 | 25238 | + | 3.D.1.6.4 |
Gene ID: Rep_531_c_2_10
Type: CAZyme
Location: 11568 - 12731 (-)
Type: CAZyme
Location: 11568 - 12731 (-)
Gene ID: Rep_531_c_2_11
Type: CAZyme
Location: 12736 - 13548 (-)
Type: CAZyme
Location: 12736 - 13548 (-)
Gene ID: Rep_531_c_2_12
Type: CAZyme
Location: 13530 - 14483 (-)
Type: CAZyme
Location: 13530 - 14483 (-)
Gene ID: Rep_531_c_2_13
Type: CAZyme
Location: 14488 - 15507 (-)
Type: CAZyme
Location: 14488 - 15507 (-)
Gene ID: Rep_531_c_2_14
Type: CAZyme
Location: 15749 - 16894 (+)
Type: CAZyme
Location: 15749 - 16894 (+)
Gene ID: Rep_531_c_2_15
Type: pfam
Location: 16891 - 17646 (+)
Type: pfam
Location: 16891 - 17646 (+)
Gene ID: Rep_531_c_2_16
Type: CAZyme
Location: 17654 - 18388 (+)
Type: CAZyme
Location: 17654 - 18388 (+)
Gene ID: Rep_531_c_2_17
Type: CAZyme
Location: 18394 - 19134 (+)
Type: CAZyme
Location: 18394 - 19134 (+)
Gene ID: Rep_531_c_2_18
Type: pfam
Location: 19158 - 20063 (-)
Type: pfam
Location: 19158 - 20063 (-)
Gene ID: Rep_531_c_2_19
Type: TC
Location: 20186 - 22024 (+)
Type: TC
Location: 20186 - 22024 (+)
Gene ID: Rep_531_c_2_20
Type: CAZyme
Location: 22042 - 22950 (-)
Type: CAZyme
Location: 22042 - 22950 (-)
Gene ID: Rep_531_c_2_21
Type: pfam
Location: 23090 - 23695 (-)
Type: pfam
Location: 23090 - 23695 (-)
Gene ID: Rep_531_c_2_22
Type: pfam
Location: 23834 - 24844 (+)
Type: pfam
Location: 23834 - 24844 (+)
Gene ID: Rep_531_c_2_23
Type: TC
Location: 25002 - 25238 (+)
Type: TC
Location: 25002 - 25238 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola fibrisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.