Cluster: Rep_531_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/galactan
- Genome ID: Rep_531
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_531_c_16 | Rep_531_c_16_21 | 24015 | 25010 | - | GH53 |
| CAZyme | Rep_531_c_16 | Rep_531_c_16_22 | 25038 | 27479 | - | GH2 |
| CAZyme | Rep_531_c_16 | Rep_531_c_16_23 | 27503 | 28576 | - | GH53 |
| pfam | Rep_531_c_16 | Rep_531_c_16_24 | 28607 | 30379 | - | SusE | DUF5111 | DUF5114 |
| pfam | Rep_531_c_16 | Rep_531_c_16_25 | 30402 | 31991 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_531_c_16 | Rep_531_c_16_26 | 32010 | 34979 | - | 1.B.14.6.1 |
Gene ID: Rep_531_c_16_21
Type: CAZyme
Location: 24015 - 25010 (-)
Type: CAZyme
Location: 24015 - 25010 (-)
Gene ID: Rep_531_c_16_22
Type: CAZyme
Location: 25038 - 27479 (-)
Type: CAZyme
Location: 25038 - 27479 (-)
Gene ID: Rep_531_c_16_23
Type: CAZyme
Location: 27503 - 28576 (-)
Type: CAZyme
Location: 27503 - 28576 (-)
Gene ID: Rep_531_c_16_24
Type: pfam
Location: 28607 - 30379 (-)
Type: pfam
Location: 28607 - 30379 (-)
Gene ID: Rep_531_c_16_25
Type: pfam
Location: 30402 - 31991 (-)
Type: pfam
Location: 30402 - 31991 (-)
Gene ID: Rep_531_c_16_26
Type: TC
Location: 32010 - 34979 (-)
Type: TC
Location: 32010 - 34979 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola fibrisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.