Cluster: Rep_531_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_531
- CGC Family ID: CGCFAM_01743
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_531_c_6 | Rep_531_c_6_78 | 107126 | 108538 | - | CE20 |
| CAZyme | Rep_531_c_6 | Rep_531_c_6_79 | 108576 | 109733 | - | CE2 |
| pfam | Rep_531_c_6 | Rep_531_c_6_80 | 109936 | 110826 | + | Shikimate_DH | ApbA | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| NULL(UNKNOWN) | Rep_531_c_6 | Rep_531_c_6_81 | 110906 | 111097 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_531_c_6 | Rep_531_c_6_82 | 111117 | 112466 | - | 2.A.66.1.45 |
| CAZyme | Rep_531_c_6 | Rep_531_c_6_83 | 112643 | 114808 | + | GH89 |
| NULL(UNKNOWN) | Rep_531_c_6 | Rep_531_c_6_84 | 114845 | 115912 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_531_c_6 | Rep_531_c_6_85 | 115946 | 118960 | + | 1.B.14.6.1 |
| pfam | Rep_531_c_6 | Rep_531_c_6_86 | 118986 | 120653 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_531_c_6 | Rep_531_c_6_87 | 120810 | 123170 | + | GH92 |
| CAZyme | Rep_531_c_6 | Rep_531_c_6_88 | 123198 | 124598 | + | GH28 |
| TF | Rep_531_c_6 | Rep_531_c_6_89 | 124711 | 128859 | - | HTH_AraC |
| TC | Rep_531_c_6 | Rep_531_c_6_90 | 128871 | 130055 | - | 2.A.1.2.14 |
Gene ID: Rep_531_c_6_78
Type: CAZyme
Location: 107126 - 108538 (-)
Type: CAZyme
Location: 107126 - 108538 (-)
Gene ID: Rep_531_c_6_79
Type: CAZyme
Location: 108576 - 109733 (-)
Type: CAZyme
Location: 108576 - 109733 (-)
Gene ID: Rep_531_c_6_80
Type: pfam
Location: 109936 - 110826 (+)
Type: pfam
Location: 109936 - 110826 (+)
Gene ID: Rep_531_c_6_81
Type:
Location: 110906 - 111097 (+)
Type:
Location: 110906 - 111097 (+)
Gene ID: Rep_531_c_6_82
Type: TC
Location: 111117 - 112466 (-)
Type: TC
Location: 111117 - 112466 (-)
Gene ID: Rep_531_c_6_83
Type: CAZyme
Location: 112643 - 114808 (+)
Type: CAZyme
Location: 112643 - 114808 (+)
Gene ID: Rep_531_c_6_84
Type:
Location: 114845 - 115912 (+)
Type:
Location: 114845 - 115912 (+)
Gene ID: Rep_531_c_6_85
Type: TC
Location: 115946 - 118960 (+)
Type: TC
Location: 115946 - 118960 (+)
Gene ID: Rep_531_c_6_86
Type: pfam
Location: 118986 - 120653 (+)
Type: pfam
Location: 118986 - 120653 (+)
Gene ID: Rep_531_c_6_87
Type: CAZyme
Location: 120810 - 123170 (+)
Type: CAZyme
Location: 120810 - 123170 (+)
Gene ID: Rep_531_c_6_88
Type: CAZyme
Location: 123198 - 124598 (+)
Type: CAZyme
Location: 123198 - 124598 (+)
Gene ID: Rep_531_c_6_89
Type: TF
Location: 124711 - 128859 (-)
Type: TF
Location: 124711 - 128859 (-)
Gene ID: Rep_531_c_6_90
Type: TC
Location: 128871 - 130055 (-)
Type: TC
Location: 128871 - 130055 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola fibrisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.