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Cluster: Rep_531_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_531_c_5 Rep_531_c_5_31 39123 40199 + GT4
CAZyme Rep_531_c_5 Rep_531_c_5_32 40227 41489 + GT4
CAZyme Rep_531_c_5 Rep_531_c_5_33 41482 42255 + GT2
TC Rep_531_c_5 Rep_531_c_5_34 42299 44791 - 9.B.144.1.4
pfam Rep_531_c_5 Rep_531_c_5_35 44882 45577 + PNP_UDP_1
pfam Rep_531_c_5 Rep_531_c_5_36 45584 46069 + LuxS
CAZyme Rep_531_c_5 Rep_531_c_5_37 46263 48677 - GH2
pfam Rep_531_c_5 Rep_531_c_5_38 48772 49440 - DUF3823 | DUF3823_C
pfam Rep_531_c_5 Rep_531_c_5_39 49449 51311 - SusD_RagB | SusD-like_3
TC Rep_531_c_5 Rep_531_c_5_40 51327 54428 - 1.B.14.6.1
NULL(UNKNOWN) Rep_531_c_5 Rep_531_c_5_41 54385 54600 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_531_c_5 Rep_531_c_5_42 54976 56571 - GH30_4
TC Rep_531_c_5 Rep_531_c_5_43 56595 58178 - 8.A.46.1.5
TC Rep_531_c_5 Rep_531_c_5_44 58196 61219 - 1.B.14.6.1
NULL(UNKNOWN) Rep_531_c_5 Rep_531_c_5_45 61240 62718 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_531_c_5 Rep_531_c_5_46 62895 66995 + HTH_AraC | HTH_AraC
TC Rep_531_c_5 Rep_531_c_5_47 67224 70223 - 2.A.6.4.3
peptidase Rep_531_c_5 Rep_531_c_5_48 70429 72522 - M03.UPA
pfam Rep_531_c_5 Rep_531_c_5_49 72541 73599 - Exo_endo_phos
TC Rep_531_c_5 Rep_531_c_5_50 73596 74489 - 9.B.104.1.2
TC Rep_531_c_5 Rep_531_c_5_51 74464 75138 - 9.B.104.1.5
Gene ID: Rep_531_c_5_31
Type: CAZyme
Location: 39123 - 40199 (+)
Gene ID: Rep_531_c_5_32
Type: CAZyme
Location: 40227 - 41489 (+)
Gene ID: Rep_531_c_5_33
Type: CAZyme
Location: 41482 - 42255 (+)
Gene ID: Rep_531_c_5_34
Type: TC
Location: 42299 - 44791 (-)
Gene ID: Rep_531_c_5_35
Type: pfam
Location: 44882 - 45577 (+)
Gene ID: Rep_531_c_5_36
Type: pfam
Location: 45584 - 46069 (+)
Gene ID: Rep_531_c_5_37
Type: CAZyme
Location: 46263 - 48677 (-)
Gene ID: Rep_531_c_5_38
Type: pfam
Location: 48772 - 49440 (-)
Gene ID: Rep_531_c_5_39
Type: pfam
Location: 49449 - 51311 (-)
Gene ID: Rep_531_c_5_40
Type: TC
Location: 51327 - 54428 (-)
Gene ID: Rep_531_c_5_41
Type:
Location: 54385 - 54600 (-)
Gene ID: Rep_531_c_5_42
Type: CAZyme
Location: 54976 - 56571 (-)
Gene ID: Rep_531_c_5_43
Type: TC
Location: 56595 - 58178 (-)
Gene ID: Rep_531_c_5_44
Type: TC
Location: 58196 - 61219 (-)
Gene ID: Rep_531_c_5_45
Type:
Location: 61240 - 62718 (-)
Gene ID: Rep_531_c_5_46
Type: TF
Location: 62895 - 66995 (+)
Gene ID: Rep_531_c_5_47
Type: TC
Location: 67224 - 70223 (-)
Gene ID: Rep_531_c_5_48
Type: peptidase
Location: 70429 - 72522 (-)
Gene ID: Rep_531_c_5_49
Type: pfam
Location: 72541 - 73599 (-)
Gene ID: Rep_531_c_5_50
Type: TC
Location: 73596 - 74489 (-)
Gene ID: Rep_531_c_5_51
Type: TC
Location: 74464 - 75138 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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