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Cluster: Rep_531_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_531_c_3 Rep_531_c_3_93 101569 103563 + 9.B.18.2.1
pfam Rep_531_c_3 Rep_531_c_3_94 103511 104479 + adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_10 | GDP_Man_Dehyd
pfam Rep_531_c_3 Rep_531_c_3_95 104487 105758 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC Rep_531_c_3 Rep_531_c_3_96 105760 107196 + 2.A.66.2.6
CAZyme Rep_531_c_3 Rep_531_c_3_97 107330 108409 + GT4
pfam Rep_531_c_3 Rep_531_c_3_98 108413 109564 + Wzy_C
CAZyme Rep_531_c_3 Rep_531_c_3_99 109545 110624 + GT4
CAZyme Rep_531_c_3 Rep_531_c_3_100 110627 111439 + GT2
CAZyme Rep_531_c_3 Rep_531_c_3_101 111460 112245 + GT2
STP Rep_531_c_3 Rep_531_c_3_102 112252 113460 + Aminotran_1_2
TC Rep_531_c_3 Rep_531_c_3_103 113472 114059 + 9.B.18.1.3
pfam Rep_531_c_3 Rep_531_c_3_104 114056 114856 + Poly_export | SLBB | SLBB_2
TC Rep_531_c_3 Rep_531_c_3_105 114853 117204 + 8.A.3.3.4
pfam Rep_531_c_3 Rep_531_c_3_106 117224 118288 + NTP_transf_5
sulfatase Rep_531_c_3 Rep_531_c_3_107 118369 119913 - S1_16
CAZyme Rep_531_c_3 Rep_531_c_3_108 119930 121333 - GH29
sulfatase Rep_531_c_3 Rep_531_c_3_109 121336 122793 - S1_27
pfam Rep_531_c_3 Rep_531_c_3_110 122877 124865 - SusD_RagB | SusD-like_3
TC Rep_531_c_3 Rep_531_c_3_111 124889 128098 - 1.B.14.6.1
Gene ID: Rep_531_c_3_93
Type: TC
Location: 101569 - 103563 (+)
Gene ID: Rep_531_c_3_94
Type: pfam
Location: 103511 - 104479 (+)
Gene ID: Rep_531_c_3_95
Type: pfam
Location: 104487 - 105758 (+)
Gene ID: Rep_531_c_3_96
Type: TC
Location: 105760 - 107196 (+)
Gene ID: Rep_531_c_3_97
Type: CAZyme
Location: 107330 - 108409 (+)
Gene ID: Rep_531_c_3_98
Type: pfam
Location: 108413 - 109564 (+)
Gene ID: Rep_531_c_3_99
Type: CAZyme
Location: 109545 - 110624 (+)
Gene ID: Rep_531_c_3_100
Type: CAZyme
Location: 110627 - 111439 (+)
Gene ID: Rep_531_c_3_101
Type: CAZyme
Location: 111460 - 112245 (+)
Gene ID: Rep_531_c_3_102
Type: STP
Location: 112252 - 113460 (+)
Gene ID: Rep_531_c_3_103
Type: TC
Location: 113472 - 114059 (+)
Gene ID: Rep_531_c_3_104
Type: pfam
Location: 114056 - 114856 (+)
Gene ID: Rep_531_c_3_105
Type: TC
Location: 114853 - 117204 (+)
Gene ID: Rep_531_c_3_106
Type: pfam
Location: 117224 - 118288 (+)
Gene ID: Rep_531_c_3_107
Type: sulfatase
Location: 118369 - 119913 (-)
Gene ID: Rep_531_c_3_108
Type: CAZyme
Location: 119930 - 121333 (-)
Gene ID: Rep_531_c_3_109
Type: sulfatase
Location: 121336 - 122793 (-)
Gene ID: Rep_531_c_3_110
Type: pfam
Location: 122877 - 124865 (-)
Gene ID: Rep_531_c_3_111
Type: TC
Location: 124889 - 128098 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_531_c_3_110 vegetarian > vegan 2.41513 0.03300

🧭 Explore Read Mapping of CGC

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