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Cluster: Rep_500_CGC93

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_281 Rep_500_c_281_3 2130 3557 - GH32
NULL(UNKNOWN) Rep_500_c_281 Rep_500_c_281_4 3654 5153 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_500_c_281 Rep_500_c_281_5 5210 7723 - CBM6 | CBM6 | GH43_2
CAZyme Rep_500_c_281 Rep_500_c_281_6 8105 11347 + GH2
CAZyme Rep_500_c_281 Rep_500_c_281_7 11384 13645 + GH92
NULL(UNKNOWN) Rep_500_c_281 Rep_500_c_281_8 13847 16429 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_500_c_281 Rep_500_c_281_9 16878 20156 + 1.B.14.6.2
TC Rep_500_c_281 Rep_500_c_281_10 20168 22156 + 8.A.46.2.2
Gene ID: Rep_500_c_281_3
Type: CAZyme
Location: 2130 - 3557 (-)
Gene ID: Rep_500_c_281_4
Type:
Location: 3654 - 5153 (-)
Gene ID: Rep_500_c_281_5
Type: CAZyme
Location: 5210 - 7723 (-)
Gene ID: Rep_500_c_281_6
Type: CAZyme
Location: 8105 - 11347 (+)
Gene ID: Rep_500_c_281_7
Type: CAZyme
Location: 11384 - 13645 (+)
Gene ID: Rep_500_c_281_8
Type:
Location: 13847 - 16429 (+)
Gene ID: Rep_500_c_281_9
Type: TC
Location: 16878 - 20156 (+)
Gene ID: Rep_500_c_281_10
Type: TC
Location: 20168 - 22156 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_281_7 vegan > omnivore 1.20970 0.00358
Rep_500_c_281_7 vegetarian > omnivore 1.02409 0.03809

🧭 Explore Read Mapping of CGC

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