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Cluster: Rep_500_CGC87

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_500_c_267 Rep_500_c_267_15 19592 21739 - 1.B.14.10.1
pfam Rep_500_c_267 Rep_500_c_267_16 21766 22419 - HmuY
pfam Rep_500_c_267 Rep_500_c_267_17 22438 23295 - Calycin_like | Calycin_like
TC Rep_500_c_267 Rep_500_c_267_18 23568 25166 + 2.A.81.1.5
NULL(UNKNOWN) Rep_500_c_267 Rep_500_c_267_19 25213 25593 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_500_c_267 Rep_500_c_267_20 25683 28004 + 1.B.14.1.4
TC Rep_500_c_267 Rep_500_c_267_21 28136 29050 - 2.A.4.7.6
CAZyme Rep_500_c_267 Rep_500_c_267_22 29235 31541 + GH20
TF Rep_500_c_267 Rep_500_c_267_23 31666 32439 - GerE
TC Rep_500_c_267 Rep_500_c_267_24 32526 33605 + 9.B.97.1.10
Gene ID: Rep_500_c_267_15
Type: TC
Location: 19592 - 21739 (-)
Gene ID: Rep_500_c_267_16
Type: pfam
Location: 21766 - 22419 (-)
Gene ID: Rep_500_c_267_17
Type: pfam
Location: 22438 - 23295 (-)
Gene ID: Rep_500_c_267_18
Type: TC
Location: 23568 - 25166 (+)
Gene ID: Rep_500_c_267_19
Type:
Location: 25213 - 25593 (+)
Gene ID: Rep_500_c_267_20
Type: TC
Location: 25683 - 28004 (+)
Gene ID: Rep_500_c_267_21
Type: TC
Location: 28136 - 29050 (-)
Gene ID: Rep_500_c_267_22
Type: CAZyme
Location: 29235 - 31541 (+)
Gene ID: Rep_500_c_267_23
Type: TF
Location: 31666 - 32439 (-)
Gene ID: Rep_500_c_267_24
Type: TC
Location: 32526 - 33605 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_267_16 vegan > omnivore 1.26393 0.00358
Rep_500_c_267_16 vegetarian > omnivore 1.66755 0.02280

🧭 Explore Read Mapping of CGC

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